Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
155 |
25.8 |
2285122 |
88.0% |
2010907 |
104.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
AM260479 |
3,390,388 |
Δ2 bp :: ISAE1 (+) +8 bp :: +CC |
coding (488‑495/1047 nt) |
h16_A3132 → |
response regulator containing an atypical phosphorylation pocket |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AM260479 |
3390388 = | 0 (0.000) | 29 (1.140) |
23/206 |
0.2 |
100% |
coding (488/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
= 3400456 |
NA (NA) | noncoding (2/8 nt) |
DR‑R ISAE1 |
direct repeat DR‑R ISAE1 |
| * |
? |
AM260479 |
= 3390395 | 0 (0.000) | 31 (1.230) |
27/204 |
0.1 |
100% |
coding (495/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
3399144 = |
NA (NA) | noncoding (3/1313 nt) |
ISAE1 |
insertion sequence ISAE1 |
GAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390497‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
GAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGT < 1:518942/134‑1
AAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATAGCGGCTCTTTTGAAAAATGAGTGGGTTATGC > 2:589671/1‑134
CCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGG > 1:524177/1‑134
AGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCG > 2:34136/1‑134
AGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCG < 2:332282/134‑1
CGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTC > 1:403030/1‑134
CGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTT < 2:403030/133‑1
ACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC < 2:524177/134‑1
AAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:603910/1‑130
AAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:638175/1‑130
GTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGAT > 1:1112167/1‑133
GCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGG < 1:34136/134‑1
CTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 2:638175/134‑1
CTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 2:603910/134‑1
ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGG > 2:1063781/1‑107
ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGG > 2:611545/1‑107
ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGG < 1:1063781/107‑1
ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGG < 1:611545/107‑1
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATCTTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTT > 2:373975/1‑134
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGC < 2:581642/67‑1
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGC > 1:581642/1‑67
GATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAG > 2:115380/1‑134
GATTTCCTGGTCCAGCCGCTCGACCATATAGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGA < 1:589671/132‑1
CCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCA > 2:139472/1‑133
CCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCA > 2:236934/1‑133
AGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGC < 1:339764/134‑1
CTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGT > 1:894152/1‑109
CTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGT < 2:894152/109‑1
CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC > 1:427609/1‑134
GAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390497‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
