Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
152 |
24.9 |
2083062 |
91.6% |
1908084 |
109.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
AM260479 |
3,390,388 |
Δ2 bp :: ISAE1 (+) +8 bp :: +CC |
coding (488‑495/1047 nt) |
h16_A3132 → |
response regulator containing an atypical phosphorylation pocket |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AM260479 |
3390388 = | 0 (0.000) | 33 (1.350) |
25/216 |
0.1 |
100% |
coding (488/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
= 3400456 |
NA (NA) | noncoding (2/8 nt) |
DR‑R ISAE1 |
direct repeat DR‑R ISAE1 |
| * |
? |
AM260479 |
= 3390395 | 0 (0.000) | 37 (1.520) |
23/214 |
0.2 |
100% |
coding (495/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
3399144 = |
NA (NA) | noncoding (3/1313 nt) |
ISAE1 |
insertion sequence ISAE1 |
TCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390505‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
TCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAAT < 2:617558/134‑1
GACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA < 2:347724/129‑1
GACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA > 1:347724/1‑129
ACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTA < 2:559220/134‑1
AAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGC < 1:99683/134‑1
GCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCC < 2:478752/134‑1
ACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC < 2:245312/134‑1
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:428569/1‑133
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC > 1:480997/1‑126
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC < 2:480997/126‑1
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTT < 2:284982/66‑1
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTT > 1:284982/1‑66
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:601429/1‑131
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:608164/1‑131
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:27147/1‑131
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTT > 1:791939/1‑65
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTT < 2:791939/65‑1
CATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATG > 2:118401/1‑134
ATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGG > 2:472310/1‑134
GATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAG > 1:1017312/1‑134
CCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCA < 1:472310/133‑1
GTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAA < 1:118401/134‑1
GTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGA < 1:982222/102‑1
GTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGA > 2:982222/1‑102
TCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGC < 2:258568/58‑1
TCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGC > 1:258568/1‑58
GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAA < 2:401251/129‑1
GCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAA > 1:401251/1‑129
CTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCC > 1:934004/1‑134
CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < 2:428569/134‑1
CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < 2:1017312/134‑1
GCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG > 2:242079/1‑89
GCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 1:242079/89‑1
TCGGACAGGAACGAAAAGGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390505‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
