Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
518,612 |
G→C |
intergenic (+17/‑48) |
h16_A0492 → / → pgam2 |
Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 518,612 | 0 | G | C | 100.0%
| 194.4
/ NA
| 50 | intergenic (+17/‑48) | h16_A0492/pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (22/28); total (22/28) |
CACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCG > AM260479/518499‑518739
|
cACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCgg < 2:616677/133‑1 (MQ=255)
aCCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGc < 1:226628/133‑1 (MQ=255)
gcgcgcAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCa > 1:486691/1‑133 (MQ=255)
cgcAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCgcgg < 2:193545/119‑1 (MQ=255)
cgcAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCgcgg > 1:193545/1‑119 (MQ=255)
ggTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAAt < 1:513771/134‑1 (MQ=255)
cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 1:473460/1‑134 (MQ=255)
cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 1:339440/1‑134 (MQ=255)
gcgcAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcccc < 1:1005544/133‑1 (MQ=255)
aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCaa < 2:573211/92‑1 (MQ=255)
aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCaa > 1:573211/1‑92 (MQ=255)
aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGcc > 2:870292/1‑134 (MQ=255)
ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 1:741438/134‑1 (MQ=255)
ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:339440/134‑1 (MQ=255)
cAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 2:285110/134‑1 (MQ=255)
aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCgcgg < 1:634406/75‑1 (MQ=255)
aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCgcgg > 2:634406/1‑75 (MQ=255)
aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa > 1:603969/1‑132 (MQ=255)
aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:603969/132‑1 (MQ=255)
aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAtt < 2:274446/134‑1 (MQ=255)
cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 2:473460/134‑1 (MQ=255)
cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 1:870292/134‑1 (MQ=255)
cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 2:131185/134‑1 (MQ=255)
cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 2:486691/134‑1 (MQ=255)
aCCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTgg > 1:555362/1‑134 (MQ=255)
cACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCta > 1:956392/1‑133 (MQ=255)
ataCGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGa < 1:55982/87‑1 (MQ=255)
ataCGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGa > 2:55982/1‑87 (MQ=255)
cGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCAcc < 2:555362/133‑1 (MQ=255)
cGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCAcc < 2:211422/133‑1 (MQ=255)
gCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 2:351757/113‑1 (MQ=255)
gCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt > 1:351757/1‑113 (MQ=255)
aCCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGt > 1:332378/1‑134 (MQ=255)
ccccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATc > 1:695442/1‑69 (MQ=255)
ccccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATc < 2:695442/69‑1 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCa < 1:1012818/58‑1 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCa > 2:1012818/1‑58 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt > 2:322317/1‑105 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 1:322317/105‑1 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 1:880725/109‑1 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc > 2:880725/1‑109 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATc < 2:302646/129‑1 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATc > 1:302646/1‑129 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGAt > 2:598232/1‑134 (MQ=255)
ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGAt > 2:610047/1‑134 (MQ=255)
aTAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt > 1:680810/1‑72 (MQ=255)
aTAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt < 2:680810/72‑1 (MQ=255)
tCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGcc < 2:742745/134‑1 (MQ=255)
ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt > 2:1020666/1‑59 (MQ=255)
ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt < 1:1020666/59‑1 (MQ=255)
gcgccgcgccAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCg > 1:865083/1‑134 (MQ=255)
|
CACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCG > AM260479/518499‑518739
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGACATCGACCGGCTGCCGCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGAGCGCCGGCTGCAGGGCCA > AM260479/518465‑518760
|
gtgcCATCGACCGGCTGCCGCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGC > GWNJ‑0478:712:GW2002102894th:2:1202:16893:12958/5‑150 (MQ=60)
CGACCGGCTGCCGCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCac < GWNJ‑0478:712:GW2002102894th:2:1107:6301:34818/149‑3 (MQ=60)
ATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAA > GWNJ‑0478:712:GW2002102894th:2:1214:18349:21292/1‑149 (MQ=60)
gatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGG < GWNJ‑0478:712:GW2002102894th:2:2108:6691:91194/105‑1 (MQ=60)
GCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGC > GWNJ‑0478:712:GW2002102894th:2:1112:20178:41434/1‑150 (MQ=60)
CACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCC < GWNJ‑0478:712:GW2002102894th:2:1114:13092:29665/149‑1 (MQ=60)
cagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagCTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAG < GWNJ‑0478:712:GW2002102894th:2:2215:8310:80578/88‑1 (MQ=60)
AGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGC < GWNJ‑0478:712:GW2002102894th:2:1216:4375:69413/150‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAA < GWNJ‑0478:712:GW2002102894th:2:1102:18659:86819/117‑1 (MQ=60)
ATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCC > GWNJ‑0478:712:GW2002102894th:2:1207:3737:72816/1‑150 (MQ=60)
ATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCC > GWNJ‑0478:712:GW2002102894th:2:1215:20612:51808/1‑150 (MQ=60)
agaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacacAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGC < GWNJ‑0478:712:GW2002102894th:2:2216:2978:24964/89‑1 (MQ=60)
GCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:2105:20345:88193/1‑122 (MQ=60)
GTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTC > GWNJ‑0478:712:GW2002102894th:2:2107:5102:92691/1‑150 (MQ=60)
GGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTG < GWNJ‑0478:712:GW2002102894th:2:2215:3083:40649/149‑1 (MQ=60)
GCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGC > GWNJ‑0478:712:GW2002102894th:2:2102:11593:64206/1‑150 (MQ=60)
GGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTAT > GWNJ‑0478:712:GW2002102894th:2:2212:18639:68701/1‑149 (MQ=60)
GCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATAC < GWNJ‑0478:712:GW2002102894th:2:2114:5460:17319/150‑1 (MQ=60)
gtgtataagagacagCTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACC < GWNJ‑0478:712:GW2002102894th:2:1204:19141:60731/135‑1 (MQ=60)
ataagagacagCTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACC < GWNJ‑0478:712:GW2002102894th:2:2207:17851:14247/139‑1 (MQ=60)
CCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACC < GWNJ‑0478:712:GW2002102894th:2:2206:20222:47492/150‑1 (MQ=60)
CACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCtggctc > GWNJ‑0478:712:GW2002102894th:2:1206:9435:49678/1‑144 (MQ=60)
GCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTG > GWNJ‑0478:712:GW2002102894th:2:1207:19177:29481/1‑150 (MQ=60)
CACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCActgtctcttatacacatctccgagcccacgagacggagctacatctcgtat > GWNJ‑0478:712:GW2002102894th:2:2113:14305:54490/1‑99 (MQ=60)
CTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATC > GWNJ‑0478:712:GW2002102894th:2:1205:5333:32369/1‑150 (MQ=60)
CCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCtgtctcttatacacatctccgagcccacgagacggagctacatctcg > GWNJ‑0478:712:GW2002102894th:2:2110:5254:69507/1‑103 (MQ=60)
AATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGG > GWNJ‑0478:712:GW2002102894th:2:2206:17782:12848/1‑150 (MQ=60)
GGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGAGCGCCGGC > GWNJ‑0478:712:GW2002102894th:2:1216:10052:49605/1‑150 (MQ=60)
GCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctg > GWNJ‑0478:712:GW2002102894th:2:1208:15112:4102/1‑89 (MQ=60)
|
TGGACATCGACCGGCTGCCGCTCGATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACCGGGAGCGCCGGCTGCAGGGCCA > AM260479/518465‑518760
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
