mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| MC JC | AM260479 | 335,538 | Δ778 bp | [nagA]–[nagB] | [nagA], [nagB] | |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| JC JC | AM260479 | 3,390,388 | Δ2 bp :: ISAE1 (+) +8 bp :: +CC | coding (488‑495/1047 nt) | h16_A3132 → | response regulator containing an atypical phosphorylation pocket |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| JC | AM260479 | 3,403,046 | (AGGTCTCGCAGGCCAT)1→2 | coding (772/996 nt) | phcA ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260479 | 4,016,601 | Δ1 bp | coding (203/969 nt) | h16_A3718 → | probable extra‑cytoplasmic solute receptor,putative component of transport system, tripartite tricarboxylate transport (TTT) family |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,518,085 | C→T | A85T (GCC→ACC) | h16_B1356 ← | conserved hypothetical membrane spanning protein |
| RA | AM260480 | 1,537,213 | G→A | G347D (GGC→GAC) | h16_B1373 → | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| RA | AM260480 | 1,540,787 | T→C | K465R (AAG→AGG) | coxL6 ← | Aerobic‑type carbon monoxide dehydrogenase homolog, large subunit |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,063,918 | G→A | P215L (CCG→CTG) | h16_B1826 ← | Acyl‑CoA dehydrogenase |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,256,779 | G→A | P94S (CCG→TCG) | h16_B1998 ← | transcriptional regulator, XRE‑family |
| RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 55295 | 55333 | 39 | 2 [0] | [0] 2 | h16_A0040 | predicted membrane protein |
| * | * | ÷ | AM260479 | 68389 | 68393 | 5 | 3 [0] | [0] 2 | tar1 | Methyl‑accepting chemotaxis protein, contains Cache domain |
| * | * | ÷ | AM260479 | 89738 | 89749 | 12 | 3 [0] | [0] 4 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 89786 | 89845 | 60 | 4 [0] | [0] 2 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 156388 | 156440 | 53 | 2 [0] | [0] 8 | [h16_A0142] | [h16_A0142] |
| * | * | ÷ | AM260479 | 254004 | 254019 | 16 | 8 [0] | [0] 2 | h16_A0240 | Acetyltransferase (GNAT) family |
| * | * | ÷ | AM260479 | 254320 | 254366 | 47 | 3 [1] | [0] 2 | [h16_A0241] | [h16_A0241] |
| * | * | ÷ | AM260479 | 381526 | 381649 | 124 | 2 [1] | [1] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 388416 | 388432 | 17 | 3 [1] | [0] 2 | rfbB1 | dTDP‑D‑glucose 4,6‑dehydratase |
| * | * | ÷ | AM260479 | 442979 | 443007 | 29 | 3 [1] | [0] 3 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 570425 | 570481 | 57 | 5 [0] | [0] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
| * | * | ÷ | AM260479 | 602903 | 602923 | 21 | 2 [0] | [0] 2 | sua | putative translation factor (SUA5) |
| * | * | ÷ | AM260479 | 663335 | 663386 | 52 | 2 [0] | [1] 3 | h16_A0625 | outer membrane protein (porin) |
| * | * | ÷ | AM260479 | 718116 | 718171 | 56 | 2 [0] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 791421 | 791490 | 70 | 2 [0] | [1] 2 | h16_A0732 | Beta‑propeller domains of methanol dehydrogenase‑type (homolog) |
| * | * | ÷ | AM260479 | 1017275 | 1017322 | 48 | 3 [1] | [0] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1129280 | 1129374 | 95 | 3 [0] | [1] 2 | [h16_A1031] | [h16_A1031] |
| * | * | ÷ | AM260479 | 1228122 | 1228149 | 28 | 2 [1] | [0] 2 | h16_A1126/glnE | conserved hypothetical protein/glutamine synthetase adenylyltransferase |
| * | * | ÷ | AM260479 | 1319158 | 1319193 | 36 | 6 [1] | [0] 2 | h16_A1213/suhB | conserved hypothetical protein/inositol monophosphatase |
| * | * | ÷ | AM260479 | 1381173 | 1381207 | 35 | 3 [1] | [0] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1402334 | 1402361 | 28 | 3 [0] | [0] 3 | h16_A1291/h16_A1292 | Isovaleryl‑CoA dehydrogenase/ATP‑dependent transcriptional regulator,MalT‑family |
| * | * | ÷ | AM260479 | 1578934 | 1578935 | 2 | 2 [0] | [0] 2 | mfd/h16_A1456 | Transcription‑repair coupling factor/4‑Diphosphocytidyl‑2‑methyl‑D‑erithritol synthase |
| * | * | ÷ | AM260479 | 1714333 | 1714334 | 2 | 2 [0] | [0] 2 | h16_A1582 | DNA segregation ATPase FtsK/SpoIIIE related protein |
| * | * | ÷ | AM260479 | 1747589 | 1747609 | 21 | 2 [1] | [1] 4 | aspT | putative aspartate:alanine antiporter |
| * | * | ÷ | AM260479 | 1871286–1871644 | 1872271–1871646 | 3–986 | 2 [1] | [1] 2 | [h16_A1714]–[apbA1] | [h16_A1714],[apbA1] |
| * | * | ÷ | AM260479 | 1953139 | 1953188 | 50 | 3 [1] | [0] 4 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
| * | * | ÷ | AM260479 | 1992841 | 1992919 | 79 | 2 [1] | [1] 5 | h16_A1830 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1993262 | 1993401 | 140 | 3 [1] | [1] 3 | h16_A1831 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2081640 | 2081660 | 21 | 2 [0] | [0] 2 | h16_A1915 | Predicted Fe‑S protein |
| * | * | ÷ | AM260479 | 2154180 | 2154200 | 21 | 2 [0] | [0] 2 | h16_A1978/h16_A1979 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260479 | 2208795 | 2208826 | 32 | 2 [1] | [1] 2 | h16_A2032 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 2253280 | 2253302 | 23 | 2 [0] | [1] 3 | h16_A2072 | predicted permease |
| * | * | ÷ | AM260479 | 2449825 | 2449871 | 47 | 2 [1] | [0] 2 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463485 | 2463519 | 35 | 3 [1] | [0] 2 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2546074 | 2546117 | 44 | 2 [0] | [1] 2 | argAB | acetylglutamate kinase and acetyltransferase |
| * | * | ÷ | AM260479 | 2723557 | 2723570 | 14 | 3 [1] | [0] 2 | h16_A2508 | Glycerol‑3‑phosphate dehydrogenase |
| * | * | ÷ | AM260479 | 2999752 | 2999800 | 49 | 3 [1] | [1] 2 | nhaP | NhaP‑type Na+/H+ and K+/H+ antiporters with a unique C‑terminal domain |
| * | * | ÷ | AM260479 | 3026547 | 3026560 | 14 | 3 [1] | [0] 3 | h16_A2799/asmA | Dinucleotide‑utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1/Uncharacterized protein involved in outer membrane biogenesis |
| * | * | ÷ | AM260479 | 3032758 | 3032782 | 25 | 2 [0] | [0] 2 | h16_A2804 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3041935 | 3041949 | 15 | 2 [0] | [0] 2 | h16_A2814 | predicted metal‑dependent hydrolase/Putative cyclase |
| * | * | ÷ | AM260479 | 3058297 | 3058308 | 12 | 3 [0] | [0] 2 | h16_A2830 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 3071315 | 3071346 | 32 | 2 [1] | [1] 2 | pilX3 | Type IV pilus assembly protein PilX |
| * | * | ÷ | AM260479 | 3207518 | 3207562 | 45 | 2 [0] | [1] 2 | cobU | Adenosylcobinamide‑phosphate guanylyltransferase(CobU) |
| * | * | ÷ | AM260479 | 3341374 | 3341407 | 34 | 4 [1] | [0] 2 | h16_A3087 | Anthranilate/para‑aminobenzoate synthase component I |
| * | * | ÷ | AM260479 | 3360887 | 3360923 | 37 | 3 [0] | [1] 2 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3365814 | 3365833 | 20 | 2 [0] | [0] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3462495 | 3462545 | 51 | 3 [1] | [0] 2 | [h16_A3204] | [h16_A3204] |
| * | * | ÷ | AM260479 | 3482480 | 3482520 | 41 | 3 [1] | [0] 2 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548181 | 3548206 | 26 | 2 [0] | [1] 3 | ftsI1 | peptidoglycan glycosyltransferase |
| * | * | ÷ | AM260479 | 3554485 | 3554515 | 31 | 2 [0] | [0] 2 | h16_A3287 | Hypothetical protein |
| * | * | ÷ | AM260479 | 3609138 | 3609193 | 56 | 2 [0] | [0] 2 | h16_A3334 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3671721 | 3671760 | 40 | 3 [1] | [1] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3722891 | 3722978 | 88 | 2 [0] | [1] 3 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
| * | * | ÷ | AM260479 | 3857113 | 3857135 | 23 | 2 [0] | [1] 3 | h16_A3590 | C4‑dicarboxylate transport protein |
| * | * | ÷ | AM260479 | 3871563 | 3871597 | 35 | 2 [0] | [1] 2 | [h16_A3603] | [h16_A3603] |
| * | * | ÷ | AM260479 | 3910011 | 3910045 | 35 | 2 [1] | [0] 2 | priA | Primosomal protein N' |
| * | * | ÷ | AM260479 | 4004532 | 4004570 | 39 | 2 [1] | [1] 2 | h16_A3710 | response regulator, NarL‑family |
| * | * | ÷ | AM260480 | 81701 | 81725 | 25 | 4 [0] | [1] 3 | fmdA1/h16_B0073 | Formamidase/ABC‑type transporter |
| * | * | ÷ | AM260480 | 174663–175127 | 180000–175130 | 4–5338 | 3 [2] | [2] 3 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193549 | 193605 | 57 | 3 [2] | [2] 5 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 287737 | 287765 | 29 | 7 [2] | [2] 3 | h16_B0251/flhB1 | Lipoprotein/flagellar biosynthesis protein |
| * | * | ÷ | AM260480 | 334554 | 334572 | 19 | 3 [1] | [1] 3 | h16_B0298/h16_B0299 | transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase |
| * | * | ÷ | AM260480 | 496910 | 496936 | 27 | 3 [0] | [2] 4 | nhaA | Na+/H+ antiporter 1 |
| * | * | ÷ | AM260480 | 571280 | 571306 | 27 | 4 [0] | [2] 6 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 665222 | 665300 | 79 | 3 [2] | [2] 5 | [h16_B0591]–[h16_B0592] | [h16_B0591],[h16_B0592] |
| * | * | ÷ | AM260480 | 686608 | 686628 | 21 | 5 [0] | [0] 3 | h16_B0616 | predicted acyl‑CoA transferase/carnitine dehydratase |
| * | * | ÷ | AM260480 | 751993 | 752045 | 53 | 3 [2] | [2] 4 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 757281 | 757355 | 75 | 3 [2] | [2] 3 | [h16_B0678] | [h16_B0678] |
| * | * | ÷ | AM260480 | 860309 | 860335 | 27 | 3 [2] | [1] 5 | h16_B0761/h16_B0762 | transcriptional regulator, TetR/AcrR‑family/conserved hypothetical membrane protein |
| * | * | ÷ | AM260480 | 867735–869615 | 872762–869620 | 6–5028 | 5 [0] | [2] 3 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
| * | * | ÷ | AM260480 | 1222279 | 1222299 | 21 | 3 [0] | [0] 3 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
| * | * | ÷ | AM260480 | 1319222 | 1319283 | 62 | 3 [1] | [2] 3 | h16_B1167/h16_B1168 | Hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1434810 | 1434860 | 51 | 3 [2] | [2] 6 | h16_B1277 | hypothetical membrane associated protein |
| * | * | ÷ | AM260480 | 1465482 | 1465557 | 76 | 4 [1] | [2] 4 | h16_B1311 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1482245 | 1482289 | 45 | 6 [2] | [1] 3 | h16_B1335 | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| * | * | ÷ | AM260480 | 1506247 | 1506305 | 59 | 4 [2] | [2] 3 | h16_B1353 | insecticidal toxin complex protein |
| * | * | ÷ | AM260480 | 1632976 | 1632990 | 15 | 3 [0] | [0] 3 | h16_B1458 | signal transduction histidine kinase |
| * | * | ÷ | AM260480 | 1681094 | 1681158 | 65 | 4 [2] | [2] 3 | h16_B1496 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1748473 | 1748533 | 61 | 3 [2] | [2] 4 | h16_B1557 | Glycosidase‑like protein |
| * | * | ÷ | AM260480 | 1869319 | 1869414 | 96 | 4 [2] | [2] 4 | [h16_B1659] | [h16_B1659] |
| * | * | ÷ | AM260480 | 2459869 | 2459925 | 57 | 3 [2] | [2] 3 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2532184 | 2532208 | 25 | 5 [1] | [2] 3 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2608863 | 2608890 | 28 | 3 [2] | [2] 3 | [h16_B2307] | [h16_B2307] |
| * | * | ÷ | AM260480 | 2670722 | 2670748 | 27 | 4 [2] | [2] 5 | h16_B2357 | Hypothetical protein |
| * | * | ÷ | AM260480 | 2866433 | 2866474 | 42 | 4 [2] | [2] 8 | h16_B2539 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 1 | 84809 | 84809 | NA [0] | [0] 56 | hoxK–[hoxW] | hoxK,hoxG,hoxZ,PHG004,hoxM,hoxL,hoxO,hoxQ,hoxR,hoxT,hoxV,hypA1,hypB1,hypF1,hypC1,hypD1,hypE1,hypX,hoxA,hoxB,hoxC,hoxJ,hoxN1,PHG027,PHG028,PHG029,PHG030,PHG031,PHG032,PHG033,PHG034,PHG035,PHG036,PHG037,PHG038,PHG039,PHG040,PHG041,PHG042,PHG043,PHG044,PHG045,PHG046,PHG047,PHG048,PHG049,PHG050,PHG051,PHG052,PHG053,PHG054,PHG055,PHG056,PHG057,PHG058,PHG059,PHG060,PHG061,PHG062,hoxN2,PHG064,PHG065,PHG066,PHG067,PHG068,PHG069,PHG070,PHG071,hypF3,hypC2,gmhA,hypD2,hypE2,hypA3,hypB3,PHG079,PHG080,PHG081,PHG082,PHG083,PHG084,PHG085,PHG086,PHG087,hoxF,hoxU,hoxY,hoxH,[hoxW] |
| * | * | ÷ | AY305378 | 151843 | 151862 | 20 | 4 [0] | [2] 3 | PHG152/PHG153 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 156547 | 156693 | 147 | 4 [2] | [2] 3 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 344533 | 344553 | 21 | 6 [1] | [1] 4 | PHG329/PHG330 | putative regulatory protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 346778 | 346809 | 32 | 4 [2] | [0] 3 | PHG331 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 411562 | 452156 | 40595 | 28 [0] | [0] NA | [nagM4]–cbbLp | [nagM4],PHG393,catB2,PHG395,nagM3,PHG397,fadD2,fadD1,nagM2,PHG401,nagM5,nagM1,catC,catB1,PHG406,tniA,tniB,tniQ,PHG410,tnpA,tnpA,PHG413,PHG414,tnpA,cbbAp,cbbKp,cbbGp,cbbZp,cbbTp,cbbPp,cbbFp,cbbEp,cbbYp,cbbXp,cbbSp,cbbLp |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 324711 | 14 (0.540) | 3 (0.130) | 3/196 | 2.2 | 20.9% | coding (196/2100 nt) | uvrD1 | Superfamily I DNA and RNA helicase |
| ? | AM260479 | = 324759 | 10 (0.420) | coding (148/2100 nt) | uvrD1 | Superfamily I DNA and RNA helicase | |||||
| * | ? | AM260479 | = 570014 | 12 (0.460) | 4 (0.170) | 3/196 | 2.2 | 25.9% | coding (390/1452 nt) | h16_A0542 | signal transduction histidine kinase |
| ? | AM260479 | = 570036 | 12 (0.510) | coding (368/1452 nt) | h16_A0542 | signal transduction histidine kinase | |||||
| * | ? | AM260479 | 589160 = | 16 (0.610) | 4 (0.160) | 4/202 | 2.0 | 21.1% | coding (1000/3072 nt) | h16_A0562 | Superfamily II DNA/RNA helicase, SNF2 family |
| ? | AM260479 | 589198 = | 15 (0.610) | coding (1038/3072 nt) | h16_A0562 | Superfamily II DNA/RNA helicase, SNF2 family | |||||
| * | ? | AM260479 | = 1027362 | 21 (0.800) | 4 (0.160) | 3/204 | 2.3 | 20.6% | coding (292/789 nt) | h16_A0931 | dehydrogenase with different specificities (related to short‑chain alcohol dehydrogenases) |
| ? | AM260479 | = 1665985 | 11 (0.450) | coding (289/783 nt) | h16_A1531 | short chain dehydrogenase | |||||
| * | ? | AM260479 | = 1446741 | 13 (0.500) | 4 (0.170) | 4/200 | 2.0 | 26.6% | coding (139/639 nt) | h16_A1332 | Succinyl‑CoA:3‑ketoacid‑coenzyme A transferase subunit B |
| ? | AM260479 | = 1446745 | 10 (0.410) | coding (143/639 nt) | h16_A1332 | Succinyl‑CoA:3‑ketoacid‑coenzyme A transferase subunit B | |||||
| * | ? | AM260479 | = 1605953 | 17 (0.650) | 9 (0.440) +23 bp |
7/170 | 1.1 | 41.0% | coding (480/1974 nt) | h16_A1481 | conserved hypothetical protein |
| ? | AM260479 | 1605977 = | 16 (0.610) | coding (504/1974 nt) | h16_A1481 | conserved hypothetical protein | |||||
| * | ? | AM260479 | 1972906 = | 24 (0.920) | 6 (0.260) | 6/188 | 1.4 | 21.5% | coding (725/1431 nt) | h16_A1809 | adenylate cyclase, family 3 |
| ? | AM260479 | 1972920 = | 23 (1.010) | coding (711/1431 nt) | h16_A1809 | adenylate cyclase, family 3 | |||||
| * | ? | AM260479 | = 2012540 | 11 (0.420) | 4 (0.160) | 4/202 | 2.0 | 27.3% | coding (79/780 nt) | h16_A1855 | sugar transferase involved in lipopolysaccharidesynthesis |
| ? | AM260479 | = 2012558 | 11 (0.450) | coding (97/780 nt) | h16_A1855 | sugar transferase involved in lipopolysaccharidesynthesis | |||||
| * | ? | AM260479 | 2515866 = | 12 (0.460) | 3 (0.130) | 3/198 | 2.2 | 24.0% | coding (1743/2568 nt) | zntA | putative heavy metal transporting P‑type ATPase |
| ? | AM260479 | 2515890 = | 8 (0.330) | coding (1719/2568 nt) | zntA | putative heavy metal transporting P‑type ATPase | |||||
| * | ? | AM260479 | 2581840 = | 17 (0.650) | 6 (0.250) | 6/198 | 1.5 | 22.4% | coding (349/975 nt) | h16_A2377 | NADPH:quinone oxidoreductase |
| ? | AM260479 | 2582004 = | 26 (1.090) | coding (513/975 nt) | h16_A2377 | NADPH:quinone oxidoreductase | |||||
| * | ? | AM260479 | 2605709 = | 15 (0.570) | 4 (0.180) | 4/184 | 1.8 | 25.2% | coding (594/2868 nt) | addB | two domain protein: Inactivated superfamily I helicase and RecB family exonuclease |
| ? | AM260479 | 2605725 = | 11 (0.490) | coding (578/2868 nt) | addB | two domain protein: Inactivated superfamily I helicase and RecB family exonuclease | |||||
| * | ? | AM260479 | 2613558 = | 9 (0.340) | 3 (0.130) | 3/184 | 2.1 | 27.7% | coding (1048/1353 nt) | h16_A2399 | Na+ driven multidrug efflux pump |
| ? | AM260479 | 2613574 = | 8 (0.360) | coding (1064/1353 nt) | h16_A2399 | Na+ driven multidrug efflux pump | |||||
| * | ? | AM260479 | 2691523 = | 18 (0.690) | 4 (0.170) | 4/200 | 2.0 | 20.2% | coding (63/933 nt) | h16_A2472 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 2691548 = | 15 (0.620) | coding (38/933 nt) | h16_A2472 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 2807997 = | 17 (0.650) | 4 (0.170) | 4/196 | 1.9 | 22.6% | coding (964/2850 nt) | kdpD1 | Osmosensitive K+ channel histidine kinase |
| ? | AM260479 | 2808050 = | 12 (0.510) | coding (911/2850 nt) | kdpD1 | Osmosensitive K+ channel histidine kinase | |||||
| * | ? | AM260479 | = 3012592 | 15 (0.570) | 4 (0.220) +33 bp |
4/150 | 1.5 | 29.2% | coding (1413/1440 nt) | h16_A2783 | predicted acyl‑CoA transferase/carnitine dehydratase |
| ? | AM260479 | 3012626 = | 13 (0.500) | coding (1379/1440 nt) | h16_A2783 | predicted acyl‑CoA transferase/carnitine dehydratase | |||||
| * | ? | AM260479 | = 3176256 | 8 (0.310) | 4 (0.180) | 4/184 | 1.8 | 38.5% | coding (1731/2166 nt) | h16_A2940 | Ferredoxin |
| ? | AM260479 | = 3176240 | 6 (0.270) | coding (1747/2166 nt) | h16_A2940 | Ferredoxin | |||||
| * | ? | AM260479 | 3501503 = | 11 (0.420) | 4 (0.160) | 4/202 | 2.0 | 27.3% | coding (75/303 nt) | h16_A3239 | hypothetical periplasmic protein |
| ? | AM260479 | 3501519 = | 11 (0.450) | coding (59/303 nt) | h16_A3239 | hypothetical periplasmic protein | |||||
| * | ? | AM260480 | 59753 = | 6 (0.210) | 4 (0.160) | 4/194 | 2.1 | 30.3% | coding (147/507 nt) | leuD4 | 3‑Isopropylmalate dehydratase small subunit |
| ? | AM260480 | 60059 = | 13 (0.510) | coding (1175/1287 nt) | leuC4 | 3‑Isopropylmalate dehydratase large subunit | |||||
| * | ? | AM260480 | 271188 = | 11 (0.390) | 5 (0.190) | 5/198 | 1.9 | 30.2% | coding (565/651 nt) | cheD1 | Chemotaxis protein |
| ? | AM260480 | 271217 = | 13 (0.500) | coding (594/651 nt) | cheD1 | Chemotaxis protein | |||||
| * | ? | AM260480 | = 355904 | 17 (0.600) | 4 (0.140) | 4/212 | 2.2 | 21.2% | coding (225/1248 nt) | h16_B0318 | conserved hypothetical protein |
| ? | AM260480 | 355973 = | 13 (0.470) | coding (294/1248 nt) | h16_B0318 | conserved hypothetical protein | |||||
| * | ? | AM260480 | 718842 = | 8 (0.280) | 4 (0.160) | 4/196 | 2.1 | 25.6% | coding (793/1068 nt) | h16_B0643 | flavodoxin reductase (ferredoxin‑NADPH reductase) family 1 |
| ? | AM260480 | 718977 = | 16 (0.630) | coding (928/1068 nt) | h16_B0643 | flavodoxin reductase (ferredoxin‑NADPH reductase) family 1 | |||||
| * | ? | AM260480 | = 732983 | 15 (0.530) | 4 (0.240) +44 bp |
4/128 | 1.4 | 30.5% | coding (707/1083 nt) | h16_B0658 | dioxygenase related to 2‑nitropropane dioxygenase |
| ? | AM260480 | 733028 = | 16 (0.570) | coding (752/1083 nt) | h16_B0658 | dioxygenase related to 2‑nitropropane dioxygenase | |||||
| * | ? | AM260480 | 1068594 = | 11 (0.390) | 6 (0.230) | 4/198 | 2.1 | 27.9% | coding (1024/1911 nt) | selB | Selenocysteine‑specific protein translation elongation factor |
| ? | AM260480 | 1068674 = | 21 (0.810) | coding (1104/1911 nt) | selB | Selenocysteine‑specific protein translation elongation factor | |||||
| * | ? | AM260480 | 1389088 = | 17 (0.600) | 4 (0.150) | 4/204 | 2.2 | 21.0% | coding (814/2520 nt) | mdoH | membrane glycosyltransferase |
| ? | AM260480 | 1389123 = | 14 (0.530) | coding (849/2520 nt) | mdoH | membrane glycosyltransferase | |||||
| * | ? | AM260480 | 1555556 = | NA (NA) | 24 (0.850) | 22/216 | 0.3 | 55.8% | coding (738/2013 nt) | cbbT2 | Transketolase |
| ? | AM260480 | = 1569278 | 19 (0.670) | coding (195/687 nt) | h16_B1400 | transcriptional regulator CRP family | |||||
| * | ? | AM260480 | = 1642180 | 6 (0.210) | 3 (0.110) | 3/208 | 2.5 | 32.0% | coding (849/2094 nt) | h16_B1463 | fusaric acid resistance efflux transporter,permease protein |
| ? | AM260480 | = 1642212 | 7 (0.260) | coding (881/2094 nt) | h16_B1463 | fusaric acid resistance efflux transporter,permease protein | |||||
| * | ? | AM260480 | 1715414 = | 20 (0.710) | 6 (0.230) | 6/200 | 1.7 | 24.7% | coding (132/978 nt) | h16_B1527 | probable extra‑cytoplasmic solute receptor |
| ? | AM260480 | 1715443 = | 18 (0.690) | coding (161/978 nt) | h16_B1527 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260480 | = 1776427 | 15 (0.530) | 5 (0.190) | 4/200 | 2.1 | 25.7% | coding (253/336 nt) | vapI | plasmid maintenance system antidote protein |
| ? | AM260480 | = 1776428 | 15 (0.580) | coding (254/336 nt) | vapI | plasmid maintenance system antidote protein | |||||
| * | ? | AM260480 | 2075262 = | 12 (0.430) | 4 (0.150) | 4/200 | 2.1 | 28.5% | coding (145/1434 nt) | h16_B1835 | aldehyde dehydrogenase family protein |
| ? | AM260480 | 2075298 = | 9 (0.350) | coding (109/1434 nt) | h16_B1835 | aldehyde dehydrogenase family protein | |||||
| * | ? | AM260480 | = 2556112 | 11 (0.390) | 4 (0.150) | 4/202 | 2.2 | 25.6% | coding (553/921 nt) | h16_B2259 | transcriptional regulator, LysR‑family |
| ? | AM260480 | = 2556127 | 13 (0.490) | coding (538/921 nt) | h16_B2259 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260480 | 2564360 = | 14 (0.500) | 4 (0.160) | 4/202 | 1.4 | 25.7% | coding (1372/3738 nt) | narG2 | respiratory nitrate reductase alpha chain (NarG) |
| ? | AY305378 | 288724 = | 10 (0.440) | coding (1381/3762 nt) | narG | respiratory nitrate reductase catalytic subunit | |||||
| * | ? | AM260480 | 2611189 = | 14 (0.500) | 4 (0.150) | 4/202 | 2.2 | 24.2% | coding (789/990 nt) | h16_B2308 | probable extra‑cytoplasmic solute receptor |
| ? | AM260480 | 2611205 = | 12 (0.460) | coding (805/990 nt) | h16_B2308 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260480 | 2671077 = | 21 (0.750) | 7 (0.290) | 7/184 | 1.3 | 27.0% | coding (182/1044 nt) | h16_B2358 | conserved hypothetical protein |
| ? | AM260480 | 2671093 = | 20 (0.840) | coding (198/1044 nt) | h16_B2358 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 2812189 | 19 (0.670) | 5 (0.200) | 5/196 | 1.8 | 20.7% | coding (406/774 nt) | h16_B2488 | ABC‑type transporter, permease component |
| ? | AM260480 | = 2812195 | 21 (0.820) | coding (400/774 nt) | h16_B2488 | ABC‑type transporter, permease component | |||||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 56 (2.330) | 38/216 | 0.0 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | 93025 = | NA (NA) | 28 (1.160) | 23/216 | 0.0 | 100% | noncoding (1/1313 nt) | ISAE1 | repeat region |
| ? | AY305378 | = 411561 | 0 (0.000) | coding (406/1008 nt) | nagM4 | putative NagM‑like protein | |||||
| * | ? | AY305378 | = 283087 | 7 (0.290) | 3 (0.130) | 3/206 | 1.8 | 23.4% | coding (1131/1221 nt) | PHG267 | conserved hypothetical protein |
| ? | AY305378 | = 283129 | 13 (0.570) | coding (1089/1221 nt) | PHG267 | conserved hypothetical protein | |||||