Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 154 26.6 2069536 90.2% 1866721 108.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260479 973,838 Δ1,320 bp [h16_A0881]–h16_A0882 [h16_A0881], h16_A0882

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 973838–974890 975157 268–1320 32 [0] [0] 32 [h16_A0881]–h16_A0882 [h16_A0881],h16_A0882

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 973837NA (NA)29 (1.240) 20/194 0.2 NA noncoding (2/1312 nt) ISAE1 insertion sequence ISAE1 isolog
?AM260479 975158 = NA (NA)intergenic (‑201/+329) h16_A0881/h16_A0883 ISAE1 Orf2 fusion protein/Hypothetical protein

GATK/CNVnator alignment

N/A