Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
AM260479 |
3,390,388 |
Δ2 bp :: ISAE1 (+) +8 bp :: +CC |
coding (488‑495/1047 nt) |
h16_A3132 → |
response regulator containing an atypical phosphorylation pocket |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AM260479 |
3390388 = | 0 (0.000) | 21 (0.800) |
20/216 |
0.3 |
100% |
coding (488/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
= 3400456 |
NA (NA) | noncoding (2/8 nt) |
DR‑R ISAE1 |
direct repeat DR‑R ISAE1 |
| * |
? |
AM260479 |
= 3390395 | 0 (0.000) | 34 (1.310) |
27/214 |
0.1 |
100% |
coding (495/1047 nt) |
h16_A3132 |
response regulator containing an atypical phosphorylation pocket |
| ? | AM260479 |
3399144 = |
NA (NA) | noncoding (3/1313 nt) |
ISAE1 |
insertion sequence ISAE1 |
GGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390488‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
GGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCA > 1:96021/1‑134
GCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGAATGCGG > 2:933924/1‑134
GCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAG > 1:684654/1‑134
ACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGC > 1:975839/1‑134
TGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCC > 2:986737/1‑125
TGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCC < 1:986737/125‑1
GCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGG > 1:770834/1‑133
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGC > 1:424902/1‑92
AAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGC < 2:424902/92‑1
TGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAAT > 2:1023221/1‑62
TGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAAT < 1:1023221/62‑1
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG > 1:526858/1‑125
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTG < 2:526858/125‑1
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTT < 1:453183/47‑1
GGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTT > 2:453183/1‑47
GCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTT < 2:96021/134‑1
TTTCCTGGTCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCT < 1:933924/134‑1
TCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA > 1:884075/1‑36
TCCAGCCGCTCGACCATATTGCGGCTCTTTTGAAAA < 2:884075/36‑1
CTCGACCATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCC > 2:243367/1‑134
CATATTGCGGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < 1:243367/134‑1
GGAATGCCGCGTCAGCAGCTCGCGCAGCGTGCGCGACAGCGTGGCAAAGTACGCCTGCTGCATGGCCTCGATTTCCTGGTCCAGCCGCTCGACCATATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3390488‑3390388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCTCTTTTGAAAAATGAGTGGGTTATGCGGCATGCGGGTTGATCGCGGAGAAGTCGAGCTTTCCGGCGATCAGGAAGATCACGGTGCGCATGGTTTTGAAGCTCACATAACCGCGGGCCTTGCGC < AM260479/3400456‑3400331
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
