Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGCGCACGGCTGCCGCCACGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCA‑GGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGG > AM260479/1227989‑1228163
|
GTGGCGCACGGCTGCCGCCACGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCAGGGTGGAGGCGGCGTCCTG < GWNJ‑0478:712:GW2002102894th:2:1211:5100:41172/150‑1 (MQ=60)
CACGGCTGCCGCCACGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCAGGGTGGAGGCGGCGTCCTGCCCGCC < GWNJ‑0478:712:GW2002102894th:2:1208:13165:42672/150‑1 (MQ=60)
gctgcggcacttcttttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGTGTGGCGGGGCCAGGGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGG < GWNJ‑0478:712:GW2002102894th:2:1210:14977:42338/60‑1 (MQ=60)
|
GTGGCGCACGGCTGCCGCCACGCCGCGCGTGCAGGCGCGCAGGAACGCGCCGGCGTGCGCGCGGGCGGAATCGTTGCGCCGGGCGCTGGTGGCATCGTTGGCCGGGGGATTCACGGGGTGTGGCGGGGCCA‑GGTGGAGGCGGCGTCCTGCCCGCCCGCGCCGCCATTGGGGGGGG > AM260479/1227989‑1228163
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
