Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,998,635 |
+C |
intergenic (‑221/+527) |
h16_A3705 ← / ← h16_A3706 |
transcriptional regulator, LysR‑family/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,998,633 | 1 | . | C | 100.0%
| 178.1
/ NA
| 46 | intergenic (‑219/+529) | h16_A3705/h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (26/20); total (26/20) |
TTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCC > AM260479/3998507‑3998760
|
ttGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccctga < 2:518654/133‑5 (MQ=255)
atatGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGc > 1:331318/1‑134 (MQ=255)
gAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTc > 2:242378/1‑134 (MQ=255)
cTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTcgc > 1:142670/1‑134 (MQ=255)
atatCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTcgccgc < 2:570777/134‑1 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCg > 1:902674/1‑134 (MQ=255)
tCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCt < 1:392614/106‑1 (MQ=255)
tCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCt > 2:392614/1‑106 (MQ=255)
aTGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCg > 2:866179/1‑133 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGa < 1:516965/133‑1 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGa < 1:538710/133‑1 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGa < 2:142670/133‑1 (MQ=255)
tttCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACgg > 1:256736/1‑134 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGc > 2:997180/1‑133 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGc > 2:150475/1‑133 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccctg < 2:904676/73‑4 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑ccctg > 1:904676/1‑70 (MQ=255)
gtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg > 1:927826/1‑134 (MQ=255)
tcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGt > 2:1061895/1‑134 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTcgccgccg > 1:948729/1‑93 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTcgccgccg < 2:948729/93‑1 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGc < 1:101806/118‑1 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGc > 2:101806/1‑118 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc < 1:1153829/134‑1 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAATTc > 2:70732/1‑134 (MQ=255)
aaGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc > 1:400422/1‑133 (MQ=255)
gACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGAtgt > 1:117071/1‑134 (MQ=255)
gACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGAtgt > 1:714194/1‑134 (MQ=255)
aGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCAc < 2:927826/132‑1 (MQ=255)
cATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGgcgc < 1:997180/134‑1 (MQ=255)
gCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCATCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg > 2:210480/1‑108 (MQ=255)
gCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCATCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg < 1:210480/108‑1 (MQ=255)
cAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAg > 2:544788/1‑134 (MQ=255)
aTAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGt < 2:714194/134‑1 (MQ=255)
gagaAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGc > 1:831087/1‑134 (MQ=255)
agaAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGcc < 1:866179/134‑1 (MQ=255)
aaaGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCaa < 1:544788/134‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc < 1:349907/98‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc > 2:349907/1‑98 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTc > 2:709796/1‑134 (MQ=255)
tGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGa > 2:1012533/1‑134 (MQ=255)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTcgccgccg > 1:939711/1‑44 (MQ=38)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTcgccgccg < 2:939711/44‑1 (MQ=38)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGgc < 2:894469/103‑1 (MQ=255)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGgc > 1:894469/1‑103 (MQ=255)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTacac > 2:680216/1‑132 (MQ=255)
aaccaaccGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTacac < 1:680216/132‑1 (MQ=255)
cGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGgcgc < 2:831087/134‑1 (MQ=255)
gCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGcc < 1:242378/134‑1 (MQ=255)
|
TTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCC > AM260479/3998507‑3998760
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTC > AM260479/3998487‑3998775
|
cagGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:1105:9428:71046/147‑1 (MQ=60)
TCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCT > GWNJ‑0478:712:GW2002102894th:2:1205:9305:4872/1‑150 (MQ=60)
gtttttttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGT < GWNJ‑0478:712:GW2002102894th:2:2115:17932:57862/62‑1 (MQ=60)
GATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGT < GWNJ‑0478:712:GW2002102894th:2:1201:16972:72395/148‑1 (MQ=60)
ATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCC > GWNJ‑0478:712:GW2002102894th:2:1109:14580:71498/1‑150 (MQ=60)
gtataagagacaGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCC < GWNJ‑0478:712:GW2002102894th:2:1206:16478:75473/137‑1 (MQ=60)
GGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCctgatcctgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:1101:18518:46042/1‑120 (MQ=60)
acctctctctttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCC < GWNJ‑0478:712:GW2002102894th:2:1202:15207:100859/62‑1 (MQ=60)
GCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGG > GWNJ‑0478:712:GW2002102894th:2:2202:14374:8595/1‑150 (MQ=60)
CAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGC > GWNJ‑0478:712:GW2002102894th:2:1114:18706:64298/1‑150 (MQ=60)
ATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTgtctcttatacacatctccgagcccacgagacactcgctaatctc > GWNJ‑0478:712:GW2002102894th:2:2202:18796:20754/1‑105 (MQ=60)
GCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGT > GWNJ‑0478:712:GW2002102894th:2:2204:12491:64124/1‑150 (MQ=60)
agACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTT < GWNJ‑0478:712:GW2002102894th:2:1106:12916:35121/148‑1 (MQ=60)
ACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCtgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:2205:5107:88315/1‑124 (MQ=60)
CATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCG > GWNJ‑0478:712:GW2002102894th:2:1208:18273:20591/1‑149 (MQ=60)
AGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATG < GWNJ‑0478:712:GW2002102894th:2:1215:14636:31075/149‑1 (MQ=60)
AGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATG < GWNJ‑0478:712:GW2002102894th:2:1214:4470:30837/149‑1 (MQ=60)
GTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTG > GWNJ‑0478:712:GW2002102894th:2:2109:9489:35641/1‑150 (MQ=60)
GTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTG > GWNJ‑0478:712:GW2002102894th:2:1108:2234:27131/1‑150 (MQ=60)
ataagagacagGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCATCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACC < GWNJ‑0478:712:GW2002102894th:2:1112:1493:33409/138‑1 (MQ=60)
cggagatgtgtataagagacagATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGAC < GWNJ‑0478:712:GW2002102894th:2:1204:17785:18791/128‑1 (MQ=60)
CGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGAC < GWNJ‑0478:712:GW2002102894th:2:2216:16580:35602/150‑1 (MQ=60)
GGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCC > GWNJ‑0478:712:GW2002102894th:2:2114:16299:20436/1‑150 (MQ=60)
CCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2114:5678:77547/1‑67 (MQ=60)
CCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTT < GWNJ‑0478:712:GW2002102894th:2:2207:21118:61665/150‑1 (MQ=60)
AGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCcctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaagcgaaaaaaaaaacaacaggccctaggat > GWNJ‑0478:712:GW2002102894th:2:1114:18477:63637/1‑37 (MQ=60)
GAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTAC < GWNJ‑0478:712:GW2002102894th:2:2116:9025:83722/150‑1 (MQ=60)
GAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACAC < GWNJ‑0478:712:GW2002102894th:2:1214:18272:59475/150‑1 (MQ=60)
AGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2205:7059:34634/1‑75 (MQ=60)
AGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGctgtctcttatacacat > GWNJ‑0478:712:GW2002102894th:2:2203:13598:58431/1‑133 (MQ=60)
GAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCAC < GWNJ‑0478:712:GW2002102894th:2:2106:3077:44546/150‑1 (MQ=60)
CGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTC < GWNJ‑0478:712:GW2002102894th:2:1115:13732:92065/150‑1 (MQ=60)
|
ATTGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTC > AM260479/3998487‑3998775
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
