mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 159,885 | Δ1 bp | coding (149/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| MC JC | AM260479 | 335,538 | Δ778 bp | [nagA]–[nagB] | [nagA], [nagB] | |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,311,480 | G→A | intergenic (+15/‑646) | tRNA‑Leu (CAG) → / → bla1 | tRNA‑Leu/Beta‑lactamase class C |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| JC JC | AM260479 | 3,390,388 | Δ2 bp :: ISAE1 (+) +8 bp :: +CC | coding (488‑495/1047 nt) | h16_A3132 → | response regulator containing an atypical phosphorylation pocket |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,518,085 | C→T | A85T (GCC→ACC) | h16_B1356 ← | conserved hypothetical membrane spanning protein |
| RA | AM260480 | 1,540,787 | T→C | K465R (AAG→AGG) | coxL6 ← | Aerobic‑type carbon monoxide dehydrogenase homolog, large subunit |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,063,918 | G→A | P215L (CCG→CTG) | h16_B1826 ← | Acyl‑CoA dehydrogenase |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,256,779 | G→A | P94S (CCG→TCG) | h16_B1998 ← | transcriptional regulator, XRE‑family |
| RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| RA | AY305378 | 682 | C→A | P190T (CCG→ACG) | hoxK → | membrane‑bound [NiFe] hydrogenase small subunit |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 55295 | 55339 | 45 | 4 [1] | [1] 2 | h16_A0040 | predicted membrane protein |
| * | * | ÷ | AM260479 | 89733 | 89830 | 98 | 3 [1] | [1] 3 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 156366 | 156440 | 75 | 2 [1] | [0] 4 | [h16_A0142] | [h16_A0142] |
| * | * | ÷ | AM260479 | 254361 | 254366 | 6 | 2 [0] | [0] 2 | h16_A0241 | Uncharacterized protein, possibly involved in aromatic compounds catabolism |
| * | * | ÷ | AM260479 | 378841 | 378910 | 70 | 3 [1] | [0] 2 | [h16_A0360] | [h16_A0360] |
| * | * | ÷ | AM260479 | 381501 | 381571 | 71 | 2 [0] | [0] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 381610 | 381676 | 67 | 2 [0] | [1] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 401581 | 401592 | 12 | 2 [0] | [0] 2 | h16_A0382 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 442864 | 442868 | 5 | 2 [0] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 442983 | 443007 | 25 | 2 [0] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 522675 | 522683 | 9 | 2 [0] | [0] 2 | ruvB | holliday junction resolvasome, helicase subunit RuvB |
| * | * | ÷ | AM260479 | 570444 | 570487 | 44 | 2 [0] | [0] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
| * | * | ÷ | AM260479 | 592763 | 592777 | 15 | 3 [0] | [0] 2 | h16_A0564 | transcriptional regulator, LuxR‑family |
| * | * | ÷ | AM260479 | 602923 | 602953 | 31 | 2 [0] | [0] 4 | sua | putative translation factor (SUA5) |
| * | * | ÷ | AM260479 | 605903 | 605954 | 52 | 2 [1] | [1] 2 | dacB | D‑Alanyl‑D‑alanine carboxypeptidase, S13 family |
| * | * | ÷ | AM260479 | 663334 | 663376 | 43 | 2 [0] | [1] 3 | h16_A0625 | outer membrane protein (porin) |
| * | * | ÷ | AM260479 | 718119 | 718158 | 40 | 2 [1] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 780140 | 780176 | 37 | 2 [0] | [0] 2 | h16_A0722/h16_A0723 | flp pilus assembly protein, pilin Flp/hypothetical membrane protein |
| * | * | ÷ | AM260479 | 789482 | 789495 | 14 | 2 [0] | [1] 3 | [h16_A0729] | [h16_A0729] |
| * | * | ÷ | AM260479 | 791386 | 791395 | 10 | 2 [0] | [0] 2 | [h16_A0732] | [h16_A0732] |
| * | * | ÷ | AM260479 | 791435 | 791499 | 65 | 2 [0] | [0] 6 | h16_A0732 | Beta‑propeller domains of methanol dehydrogenase‑type (homolog) |
| * | * | ÷ | AM260479 | 805388 | 805421 | 34 | 2 [0] | [0] 2 | h16_A0741 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1017256 | 1017322 | 67 | 7 [1] | [1] 4 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1129312 | 1129380 | 69 | 2 [0] | [1] 3 | [h16_A1031] | [h16_A1031] |
| * | * | ÷ | AM260479 | 1199166 | 1199201 | 36 | 5 [1] | [0] 3 | [h16_A1101] | [h16_A1101] |
| * | * | ÷ | AM260479 | 1206095 | 1206151 | 57 | 3 [0] | [0] 2 | h16_A1108 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1294289 | 1294315 | 27 | 2 [0] | [0] 2 | h16_A1190 | Hypothetical protein |
| * | * | ÷ | AM260479 | 1381056 | 1381086 | 31 | 2 [0] | [0] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1402344 | 1402361 | 18 | 2 [0] | [0] 2 | h16_A1291/h16_A1292 | Isovaleryl‑CoA dehydrogenase/ATP‑dependent transcriptional regulator,MalT‑family |
| * | * | ÷ | AM260479 | 1464457 | 1464477 | 21 | 2 [0] | [0] 25 | h16_A1354 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1578929 | 1578949 | 21 | 2 [0] | [0] 2 | mfd/h16_A1456 | Transcription‑repair coupling factor/4‑Diphosphocytidyl‑2‑methyl‑D‑erithritol synthase |
| * | * | ÷ | AM260479 | 1647002 | 1647025 | 24 | 3 [1] | [0] 2 | [h16_A1515] | [h16_A1515] |
| * | * | ÷ | AM260479 | 1714344 | 1714350 | 7 | 2 [0] | [0] 2 | h16_A1582 | DNA segregation ATPase FtsK/SpoIIIE related protein |
| * | * | ÷ | AM260479 | 1953131 | 1953161 | 31 | 3 [1] | [0] 2 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
| * | * | ÷ | AM260479 | 1992836 | 1992900 | 65 | 2 [1] | [1] 3 | h16_A1830 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1993340 | 1993357 | 18 | 2 [0] | [0] 2 | h16_A1831 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2081632 | 2081655 | 24 | 3 [1] | [0] 2 | [h16_A1915] | [h16_A1915] |
| * | * | ÷ | AM260479 | 2154175 | 2154200 | 26 | 2 [0] | [0] 8 | h16_A1978/h16_A1979 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260479 | 2158445 | 2158452 | 8 | 2 [1] | [0] 2 | h16_A1984 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2246785 | 2246801 | 17 | 3 [1] | [1] 4 | h16_A2064 | conserved hypothetical transmembrane protein |
| * | * | ÷ | AM260479 | 2253293 | 2253359 | 67 | 2 [0] | [0] 3 | h16_A2072 | predicted permease |
| * | * | ÷ | AM260479 | 2426121 | 2426160 | 40 | 4 [0] | [0] 4 | [lytT] | [lytT] |
| * | * | ÷ | AM260479 | 2444365 | 2444385 | 21 | 2 [0] | [0] 4 | h16_A2250 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2449836 | 2449883 | 48 | 3 [1] | [1] 4 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463472 | 2463546 | 75 | 2 [1] | [1] 3 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2546051 | 2546149 | 99 | 3 [1] | [0] 2 | argAB | acetylglutamate kinase and acetyltransferase |
| * | * | ÷ | AM260479 | 2648541 | 2648583 | 43 | 3 [1] | [1] 3 | [sixA] | [sixA] |
| * | * | ÷ | AM260479 | 2914629 | 2914729 | 101 | 2 [0] | [1] 2 | rhlE3 | ATP‑dependent RNA helicase |
| * | * | ÷ | AM260479 | 3025544 | 3025609 | 66 | 2 [0] | [1] 3 | h16_A2799 | Dinucleotide‑utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 |
| * | * | ÷ | AM260479 | 3207536 | 3207569 | 34 | 3 [0] | [0] 4 | cobU | Adenosylcobinamide‑phosphate guanylyltransferase(CobU) |
| * | * | ÷ | AM260479 | 3341385 | 3341417 | 33 | 2 [0] | [0] 2 | [h16_A3087] | [h16_A3087] |
| * | * | ÷ | AM260479 | 3360887 | 3360947 | 61 | 2 [0] | [1] 3 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3365780 | 3365847 | 68 | 2 [1] | [0] 3 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3367656 | 3367672 | 17 | 2 [1] | [1] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3452011 | 3452070 | 60 | 3 [1] | [0] 2 | [h16_A3193] | [h16_A3193] |
| * | * | ÷ | AM260479 | 3462503 | 3462557 | 55 | 3 [1] | [0] 2 | [h16_A3204] | [h16_A3204] |
| * | * | ÷ | AM260479 | 3472985 | 3473005 | 21 | 3 [0] | [0] 2 | h16_A3218/h16_A3219 | transcriptional regulator, TetR/AcrR‑family/Hypothetical protein |
| * | * | ÷ | AM260479 | 3482458 | 3482520 | 63 | 2 [0] | [1] 4 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548145 | 3548201 | 57 | 3 [1] | [0] 3 | ftsI1 | peptidoglycan glycosyltransferase |
| * | * | ÷ | AM260479 | 3554485 | 3554525 | 41 | 4 [0] | [0] 2 | h16_A3287 | Hypothetical protein |
| * | * | ÷ | AM260479 | 3609124 | 3609168 | 45 | 5 [1] | [0] 2 | h16_A3334 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3629312 | 3629318 | 7 | 3 [1] | [0] 2 | h16_A3354 | Na+ driven multidrug efflux pump |
| * | * | ÷ | AM260479 | 3671735 | 3671795 | 61 | 2 [0] | [1] 6 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3722908 | 3722979 | 72 | 3 [1] | [0] 3 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
| * | * | ÷ | AM260479 | 3857107 | 3857135 | 29 | 3 [1] | [1] 7 | h16_A3590 | C4‑dicarboxylate transport protein |
| * | * | ÷ | AM260479 | 3871550 | 3871592 | 43 | 3 [0] | [0] 2 | pyk2/h16_A3603 | pyruvate kinase/putative neutral zinc metallopeptidase |
| * | * | ÷ | AM260479 | 3906674 | 3906679 | 6 | 2 [0] | [0] 2 | putA | bifunctional proline dehydrogenase and proline oxidase |
| * | * | ÷ | AM260479 | 3910005 | 3910026 | 22 | 2 [0] | [0] 2 | priA | Primosomal protein N' |
| * | * | ÷ | AM260479 | 4004528 | 4004570 | 43 | 3 [1] | [0] 2 | h16_A3710 | response regulator, NarL‑family |
| * | * | ÷ | AM260480 | 174674–175127 | 179991–175130 | 4–5318 | 3 [2] | [2] 4 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193568 | 193605 | 38 | 4 [2] | [1] 5 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 334547 | 334583 | 37 | 3 [0] | [2] 4 | h16_B0298/h16_B0299 | transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase |
| * | * | ÷ | AM260480 | 571266 | 571293 | 28 | 4 [2] | [2] 4 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 633575 | 633654 | 80 | 4 [2] | [1] 3 | [fliR]–[fliQ] | [fliR],[fliQ] |
| * | * | ÷ | AM260480 | 665280 | 665305 | 26 | 4 [2] | [2] 5 | [h16_B0592] | [h16_B0592] |
| * | * | ÷ | AM260480 | 686615 | 686628 | 14 | 3 [1] | [0] 5 | h16_B0616 | predicted acyl‑CoA transferase/carnitine dehydratase |
| * | * | ÷ | AM260480 | 751944 | 752046 | 103 | 4 [2] | [2] 3 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 808177 | 808201 | 25 | 3 [1] | [2] 3 | dppD3 | ABC‑type transporter, ATPase component: PepT family |
| * | * | ÷ | AM260480 | 867735–869615 | 872730–869620 | 6–4996 | 4 [1] | [2] 5 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
| * | * | ÷ | AM260480 | 877831 | 877844 | 14 | 4 [2] | [2] 6 | h16_B0776 | nitrate reductase [NADH] |
| * | * | ÷ | AM260480 | 1208441 | 1208468 | 28 | 4 [2] | [2] 3 | h16_B1068 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1220246 | 1220265 | 20 | 4 [2] | [2] 4 | h16_B1078 | probable extra‑cytoplasmic solute receptor |
| * | * | ÷ | AM260480 | 1222279 | 1222284 | 6 | 4 [0] | [2] 4 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
| * | * | ÷ | AM260480 | 1465472 | 1465535 | 64 | 5 [2] | [2] 3 | h16_B1311 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1482264 | 1482307 | 44 | 3 [1] | [2] 9 | [h16_B1335] | [h16_B1335] |
| * | * | ÷ | AM260480 | 1632976 | 1633027 | 52 | 6 [2] | [2] 3 | h16_B1458 | signal transduction histidine kinase |
| * | * | ÷ | AM260480 | 1748482 | 1748514 | 33 | 5 [1] | [2] 4 | h16_B1557 | Glycosidase‑like protein |
| * | * | ÷ | AM260480 | 2193431 | 2193463 | 33 | 3 [1] | [2] 4 | h16_B1944/gdhA2 | putative hydrolase/glutamate dehydrogenase [NAD(P)+] |
| * | * | ÷ | AM260480 | 2442788 | 2442855 | 68 | 7 [2] | [2] 3 | h16_B2159 | predicted acyl‑CoA transferase/carnitine dehydratase |
| * | * | ÷ | AM260480 | 2459861 | 2459923 | 63 | 4 [2] | [2] 4 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2491421 | 2491462 | 42 | 3 [2] | [1] 3 | h16_B2199 | Lipopolysaccharide N‑acetylglucosaminyl transferase |
| * | * | ÷ | AM260480 | 2515833 | 2515901 | 69 | 4 [0] | [2] 4 | h16_B2217 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260480 | 2532184 | 2532204 | 21 | 3 [2] | [0] 4 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2608840 | 2608902 | 63 | 4 [2] | [2] 3 | [h16_B2307] | [h16_B2307] |
| * | * | ÷ | AM260480 | 2645576 | 2645653 | 78 | 3 [2] | [2] 4 | narX2 | signal transduction histidine kinase,nitrate/nitrite‑specific |
| * | * | ÷ | AM260480 | 2647122 | 2647143 | 22 | 3 [2] | [2] 3 | h16_B2337 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2670687 | 2670741 | 55 | 3 [0] | [2] 4 | h16_B2357 | Hypothetical protein |
| * | * | ÷ | AM260480 | 2866433 | 2866469 | 37 | 4 [2] | [2] 4 | h16_B2539 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 92683 | 92708 | 26 | 2 [0] | [0] 2 | PHG099/PHG100 | putative integrase/recombinase/unknown |
| * | * | ÷ | AY305378 | 99749 | 99791 | 43 | 2 [0] | [1] 2 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 151828 | 151884 | 57 | 2 [0] | [1] 2 | PHG152/PHG153 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 156691 | 156713 | 23 | 2 [0] | [0] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 263174 | 263217 | 44 | 2 [1] | [0] 2 | nosF | putative copper ATP‑binding ABC transporter |
| * | * | ÷ | AY305378 | 284874 | 284938 | 65 | 3 [1] | [1] 2 | narK1 | putative nitrite/nitrate transporter |
| * | * | ÷ | AY305378 | 346659 | 346660 | 2 | 5 [0] | [0] 2 | PHG331 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 451781 | 451863 | 83 | 2 [0] | [0] 2 | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 210833 = | 17 (0.650) | 6 (0.230) | 4/206 | 2.0 | 26.2% | coding (228/900 nt) | h16_A0197 | predicted hydrolase or acyltransferase |
| ? | AM260479 | 210850 = | 17 (0.660) | coding (245/900 nt) | h16_A0197 | predicted hydrolase or acyltransferase | |||||
| * | ? | AM260479 | = 264870 | 19 (0.730) | 5 (0.210) | 5/190 | 1.6 | 21.6% | coding (593/699 nt) | h16_A0252 | Glutathione S‑transferase |
| ? | AM260479 | = 264880 | 19 (0.790) | coding (603/699 nt) | h16_A0252 | Glutathione S‑transferase | |||||
| * | ? | AM260479 | = 274304 | 26 (0.990) | 7 (0.310) | 6/180 | 1.4 | 22.4% | coding (541/1839 nt) | glmS | Glutamine‑fructose‑6‑phosphate transaminase (isomerizing) |
| ? | AM260479 | = 274290 | 26 (1.150) | coding (527/1839 nt) | glmS | Glutamine‑fructose‑6‑phosphate transaminase (isomerizing) | |||||
| * | ? | AM260479 | = 469689 | 8 (0.310) | 4 (0.160) | 4/194 | 1.9 | 34.1% | coding (223/990 nt) | h16_A0446 | hypothetical membrane spanning protein |
| ? | AM260479 | 469705 = | 8 (0.330) | coding (239/990 nt) | h16_A0446 | hypothetical membrane spanning protein | |||||
| * | ? | AM260479 | 1174592 = | 7 (0.270) | 3 (0.120) | 3/192 | 2.2 | 34.4% | coding (708/1644 nt) | h16_A1076 | ABC‑type transporter, permease component |
| ? | AM260479 | 1174624 = | 5 (0.210) | coding (740/1644 nt) | h16_A1076 | ABC‑type transporter, permease component | |||||
| * | ? | AM260479 | 1211526 = | 11 (0.420) | 3 (0.120) | 3/196 | 2.2 | 23.6% | coding (1037/1602 nt) | h16_A1113 | pyruvate decarboxylase or related thiamine pyrophosphate‑requiring enzyme |
| ? | AM260479 | 1211547 = | 9 (0.360) | coding (1058/1602 nt) | h16_A1113 | pyruvate decarboxylase or related thiamine pyrophosphate‑requiring enzyme | |||||
| * | ? | AM260479 | = 1244191 | 20 (0.760) | 4 (0.210) +27 bp |
4/154 | 1.6 | 20.9% | coding (904/969 nt) | h16_A1141 | predicted permease, DMT superfamily |
| ? | AM260479 | 1244225 = | 21 (0.800) | coding (938/969 nt) | h16_A1141 | predicted permease, DMT superfamily | |||||
| * | ? | AM260479 | 1319500 = | 18 (0.690) | 6 (0.250) | 3/188 | 2.2 | 30.6% | coding (657/819 nt) | suhB | inositol monophosphatase |
| ? | AM260479 | 1319529 = | 11 (0.460) | coding (628/819 nt) | suhB | inositol monophosphatase | |||||
| * | ? | AM260479 | 1388475 = | 12 (0.460) | 3 (0.120) | 3/192 | 2.2 | 26.0% | coding (2777/3915 nt) | h16_A1278 | ATP‑dependent transcriptional regulator containing adenylate cyclase related domains |
| ? | AM260479 | 1388550 = | 6 (0.250) | coding (2852/3915 nt) | h16_A1278 | ATP‑dependent transcriptional regulator containing adenylate cyclase related domains | |||||
| * | ? | AM260479 | = 1477108 | 7 (0.270) | 4 (0.160) | 4/196 | 1.9 | 43.0% | coding (934/1389 nt) | h16_A1363 | cytosine deaminase or related metal‑dependent hydrolase |
| ? | AM260479 | = 1477134 | 4 (0.160) | coding (960/1389 nt) | h16_A1363 | cytosine deaminase or related metal‑dependent hydrolase | |||||
| * | ? | AM260479 | 1552775 = | 19 (0.730) | 6 (0.250) | 5/192 | 1.7 | 26.4% | coding (1189/2136 nt) | rad3 | Putative ATP‑dependent helicase |
| ? | AM260479 | 1552824 = | 16 (0.660) | coding (1238/2136 nt) | rad3 | Putative ATP‑dependent helicase | |||||
| * | ? | AM260479 | = 1606494 | 9 (0.340) | 4 (0.160) | 4/204 | 2.0 | 28.7% | coding (1021/1974 nt) | h16_A1481 | conserved hypothetical protein |
| ? | AM260479 | 1606543 = | 11 (0.430) | coding (1070/1974 nt) | h16_A1481 | conserved hypothetical protein | |||||
| * | ? | AM260479 | 1789293 = | 17 (0.650) | 4 (0.170) | 4/188 | 1.9 | 24.7% | coding (83/930 nt) | h16_A1645 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 1789331 = | 9 (0.380) | coding (45/930 nt) | h16_A1645 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 2255510 = | 16 (0.610) | 4 (0.160) | 4/194 | 1.9 | 24.3% | coding (348/1323 nt) | h16_A2073 | conserved hypothetical protein |
| ? | AM260479 | 2255553 = | 10 (0.410) | coding (305/1323 nt) | h16_A2073 | conserved hypothetical protein | |||||
| * | ? | AM260479 | = 2435929 | 19 (0.730) | 8 (0.360) | 8/176 | 1.0 | 31.3% | coding (914/1164 nt) | ssuD1 | alkanesulfonate monooxygenase |
| ? | AM260479 | = 2435913 | 19 (0.860) | coding (930/1164 nt) | ssuD1 | alkanesulfonate monooxygenase | |||||
| * | ? | AM260479 | 2451837 = | 12 (0.460) | 4 (0.160) | 4/194 | 1.9 | 26.5% | coding (403/855 nt) | h16_A2256 | ABC‑type transporter, ATPase component: HAAT family |
| ? | AM260479 | 2451857 = | 11 (0.450) | coding (383/855 nt) | h16_A2256 | ABC‑type transporter, ATPase component: HAAT family | |||||
| * | ? | AM260479 | = 2506696 | 10 (0.380) | 4 (0.160) | 4/194 | 1.9 | 28.2% | coding (625/855 nt) | h16_A2310 | putative transcriptional regulator (Ypuh‑like) |
| ? | AM260479 | = 2506700 | 11 (0.450) | coding (621/855 nt) | h16_A2310 | putative transcriptional regulator (Ypuh‑like) | |||||
| * | ? | AM260479 | 2674597 = | 19 (0.730) | 4 (0.170) | 4/188 | 1.9 | 20.4% | coding (1584/1689 nt) | abmG | 2‑Aminobenzoate‑CoA ligase |
| ? | AM260479 | 2675105 = | 14 (0.590) | coding (1076/1689 nt) | abmG | 2‑Aminobenzoate‑CoA ligase | |||||
| * | ? | AM260479 | = 3248357 | 13 (0.500) | 4 (0.170) | 4/190 | 1.9 | 25.1% | coding (91/1164 nt) | hemK1 | methylase of polypeptide chain release factors |
| ? | AM260479 | = 3248432 | 12 (0.500) | coding (166/1164 nt) | hemK1 | methylase of polypeptide chain release factors | |||||
| * | ? | AM260479 | = 3286268 | 14 (0.530) | 8 (0.330) | 6/190 | 1.4 | 39.2% | coding (1174/1593 nt) | nadB | L‑Aspartate oxidase |
| ? | AM260479 | = 3286269 | 12 (0.500) | coding (1175/1593 nt) | nadB | L‑Aspartate oxidase | |||||
| * | ? | AM260479 | 3545028 = | 18 (0.690) | 4 (0.170) | 4/184 | 1.8 | 21.1% | coding (1379/1563 nt) | murE | UDP‑N‑acetylmuramoylalanyl‑D‑glutamate 2,6‑diaminopimelate ligase |
| ? | AM260479 | = 3545023 | 14 (0.600) | coding (1384/1563 nt) | murE | UDP‑N‑acetylmuramoylalanyl‑D‑glutamate 2,6‑diaminopimelate ligase | |||||
| * | ? | AM260479 | = 3607428 | 14 (0.530) | 4 (0.180) | 4/172 | 1.7 | 27.1% | coding (415/1296 nt) | h16_A3332 | FAD‑binding Monooxygenase |
| ? | AM260479 | = 3607410 | 10 (0.460) | coding (433/1296 nt) | h16_A3332 | FAD‑binding Monooxygenase | |||||
| * | ? | AM260479 | = 3631033 | 19 (0.730) | 5 (0.200) | 5/194 | 1.7 | 21.4% | coding (22/1449 nt) | acrC6 | Cation/multidrug efflux system outer membrane porin |
| ? | AM260479 | = 3631035 | 19 (0.780) | coding (20/1449 nt) | acrC6 | Cation/multidrug efflux system outer membrane porin | |||||
| * | ? | AM260479 | = 3803245 | 15 (0.570) | 4 (0.170) | 4/188 | 1.9 | 20.8% | intergenic (‑339/+65) | h16_A3530/h16_A3531 | transcriptional regulator, AsnC‑family/Ca2+ sensor (EF‑Hand superfamily) |
| ? | AM260479 | = 3803255 | 17 (0.720) | intergenic (‑349/+55) | h16_A3530/h16_A3531 | transcriptional regulator, AsnC‑family/Ca2+ sensor (EF‑Hand superfamily) | |||||
| * | ? | AM260479 | = 3990253 | 17 (0.650) | 4 (0.150) | 4/206 | 2.0 | 21.1% | coding (623/1014 nt) | fmt | Methionyl‑tRNA formyltransferase |
| ? | AM260479 | 3990294 = | 13 (0.500) | coding (582/1014 nt) | fmt | Methionyl‑tRNA formyltransferase | |||||
| * | ? | AM260480 | = 55589 | 16 (0.530) | 4 (0.140) | 4/192 | 2.2 | 20.6% | coding (1108/1233 nt) | cynX | MFS transporter |
| ? | AM260480 | = 55592 | 16 (0.570) | coding (1105/1233 nt) | cynX | MFS transporter | |||||
| * | ? | AM260480 | 338497 = | 21 (0.690) | 6 (0.210) | 3/192 | 2.5 | 22.9% | coding (248/969 nt) | h16_B0302 | probable extra‑cytoplasmic solute receptor |
| ? | AM260480 | 338551 = | 21 (0.750) | coding (302/969 nt) | h16_B0302 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260480 | = 443296 | 15 (0.490) | 4 (0.140) | 4/192 | 2.2 | 21.7% | coding (671/1179 nt) | h16_B0390 | Acyl‑CoA transferase |
| ? | AM260480 | = 443343 | 15 (0.530) | coding (624/1179 nt) | h16_B0390 | Acyl‑CoA transferase | |||||
| * | ? | AM260480 | = 462510 | 12 (0.390) | 4 (0.140) | 4/196 | 2.2 | 23.3% | coding (811/2106 nt) | h16_B0404 | Acyl‑CoA synthetase |
| ? | AM260480 | = 462529 | 15 (0.520) | coding (792/2106 nt) | h16_B0404 | Acyl‑CoA synthetase | |||||
| * | ? | AM260480 | 672684 = | 9 (0.300) | 3 (0.100) | 3/200 | 2.6 | 20.2% | coding (429/807 nt) | h16_B0599 | oxidoreductase short‑chain dehydrogenase/reductase family |
| ? | AM260480 | 672751 = | 15 (0.510) | coding (362/807 nt) | h16_B0599 | oxidoreductase short‑chain dehydrogenase/reductase family | |||||
| * | ? | AM260480 | 1190225 = | 11 (0.360) | 4 (0.140) | 4/190 | 2.2 | 22.2% | intergenic (+6/+25) | h16_B1054/h16_B1055 | Zn‑dependent hydrolase or glyoxylase/transcriptional regulator, PspF‑family |
| ? | AM260480 | 1190274 = | 18 (0.650) | coding (1965/1989 nt) | h16_B1055 | transcriptional regulator, PspF‑family | |||||
| * | ? | AM260480 | = 1614377 | 30 (0.990) | 8 (0.290) | 6/188 | 1.7 | 24.2% | coding (668/960 nt) | gnl3 | Gluconolactonase |
| ? | AM260480 | = 1614402 | 23 (0.840) | coding (643/960 nt) | gnl3 | Gluconolactonase | |||||
| * | ? | AM260480 | 1690388 = | 14 (0.460) | 3 (0.120) | 3/176 | 2.3 | 21.6% | coding (828/912 nt) | frcK | Fructokinase |
| ? | AM260480 | 1690404 = | 10 (0.390) | coding (844/912 nt) | frcK | Fructokinase | |||||
| * | ? | AM260480 | 2335521 = | 16 (0.530) | 4 (0.140) | 4/194 | 2.2 | 20.5% | coding (716/780 nt) | fnr5 | transcriptional regulator, FNR‑like |
| ? | AM260480 | 2335676 = | 16 (0.560) | coding (810/870 nt) | h16_B2075 | hypothetical membrane associated protein | |||||
| * | ? | AM260480 | = 2746634 | 11 (0.360) | 8 (0.280) | 6/194 | 1.7 | 40.8% | coding (143/456 nt) | h16_B2431 | conserved hypothetical protein |
| ? | AM260480 | = 2746655 | 13 (0.460) | coding (122/456 nt) | h16_B2431 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 2825971 | 19 (0.620) | 4 (0.160) +GCAAGCTGGCTTGCCGTT |
4/172 | 2.0 | 20.3% | coding (40/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component |
| ? | AM260480 | 2825990 = | 19 (0.620) | coding (21/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component | |||||
| * | ? | AM260480 | 2870136 = | 19 (0.620) | 4 (0.140) | 4/194 | 2.2 | 21.2% | coding (497/2295 nt) | rssA | putative periplasmic esterase or lipase |
| ? | AM260480 | 2870163 = | 12 (0.420) | coding (524/2295 nt) | rssA | putative periplasmic esterase or lipase | |||||