Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
507,425 |
+A |
coding (27/564 nt) |
h16_B0448 → |
fragment of ABC‑type transport system,periplasmic component: APC family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 507,423 | 1 | . | A | 100.0%
| 189.6
/ NA
| 49 | E9K (GAA→AAA) | h16_B0448 | fragment of ABC‑type transport system,periplasmic component: APC family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (27/22); total (27/22) |
ACATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATG‑AACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTC > AM260480/507294‑507536
|
aCATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATG‑aaac < 2:588221/134‑3 (MQ=255)
gTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTg > 1:722023/1‑134 (MQ=255)
aaTACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATcg > 1:313733/1‑134 (MQ=255)
aCGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATcgccgccg > 1:1048944/1‑134 (MQ=255)
cggcgTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCgcgctg > 1:199921/1‑134 (MQ=255)
cggcgTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCgcgctg > 1:237930/1‑134 (MQ=255)
gcgTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCgcgctggc > 1:660527/1‑134 (MQ=255)
cgccgcCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCgctgc > 2:228799/1‑134 (MQ=255)
cgccgcCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCgctgc > 2:324305/1‑134 (MQ=255)
aCATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGcc < 2:237930/132‑1 (MQ=255)
tGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGgcgc < 1:228799/134‑1 (MQ=255)
tGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGgcgc < 2:722023/134‑1 (MQ=255)
tGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGgcgc < 2:571517/134‑1 (MQ=255)
aGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGcc < 2:199921/134‑1 (MQ=255)
gCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCa < 1:324305/134‑1 (MQ=255)
cGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc < 2:1081848/100‑1 (MQ=255)
cGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc > 1:1081848/1‑100 (MQ=255)
cGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCg > 2:1067285/1‑134 (MQ=255)
cGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCg > 2:676086/1‑134 (MQ=255)
gggCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCAtt > 2:160428/1‑134 (MQ=255)
accacATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTg < 2:313733/134‑1 (MQ=255)
accacAGAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTg < 2:1048944/134‑1 (MQ=255)
cacaTAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc > 2:896417/1‑89 (MQ=255)
cacaTAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc < 1:896417/89‑1 (MQ=255)
cacaTAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCtgaagtga > 2:995468/1‑117 (MQ=255)
cacaTAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCtgaagtga < 1:995468/117‑1 (MQ=255)
gCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc < 1:313510/79‑1 (MQ=255)
gCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTc > 2:313510/1‑79 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGaaa < 1:1002404/42‑1 (MQ=38)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGaaa > 2:1002404/1‑42 (MQ=38)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCgcgct < 2:460989/65‑1 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCgcgct > 1:460989/1‑65 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCg < 2:868617/81‑1 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCg > 1:868617/1‑81 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGcc > 2:1071226/1‑134 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGcc > 1:819350/1‑134 (MQ=255)
gACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGcc > 1:738754/1‑134 (MQ=255)
aCGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATcgccgcc > 2:370622/1‑59 (MQ=255)
aCGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATcgccgcc < 1:370622/59‑1 (MQ=255)
aCGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCAtt > 1:706523/1‑113 (MQ=255)
aCGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCAtt < 2:706523/113‑1 (MQ=255)
aCGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCg > 1:1018584/1‑134 (MQ=255)
cGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCgg < 2:378857/108‑1 (MQ=255)
cGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCgg > 1:378857/1‑108 (MQ=255)
cGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGt > 1:213793/1‑134 (MQ=255)
aaTTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTc < 1:676086/134‑1 (MQ=255)
aaTTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTc < 1:977364/134‑1 (MQ=255)
aaTTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTc < 1:160428/134‑1 (MQ=255)
aCGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCt < 1:615367/97‑1 (MQ=255)
aCGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCt > 2:615367/1‑97 (MQ=255)
|
ACATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATG‑AACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTC > AM260480/507294‑507536
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGAACTGGAGACATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATG‑AACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATACGATGGCTTTCTGCTTGCCGTTG > AM260480/507283‑507573
|
atcgtttcttgattttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAA < GWNJ‑0478:712:GW2002102894th:2:1209:9214:54238/56‑1 (MQ=60)
ccgattccatcgttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAA < GWNJ‑0478:712:GW2002102894th:2:1108:10561:25420/57‑1 (MQ=60)
ttcgtggtgcttgttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAA < GWNJ‑0478:712:GW2002102894th:2:1210:11938:87382/57‑1 (MQ=60)
GGAGACATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGG > GWNJ‑0478:712:GW2002102894th:2:2109:11361:78184/1‑150 (MQ=60)
TCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGC > GWNJ‑0478:712:GW2002102894th:2:1203:12976:88087/1‑150 (MQ=60)
tttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCC < GWNJ‑0478:712:GW2002102894th:2:2207:18644:90652/72‑1 (MQ=60)
CAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGC > GWNJ‑0478:712:GW2002102894th:2:2210:4787:40846/1‑150 (MQ=60)
GTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCtgtctcttatacacatctc > GWNJ‑0478:712:GW2002102894th:2:1115:11900:48348/1‑131 (MQ=60)
GGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGG > GWNJ‑0478:712:GW2002102894th:2:1113:13497:76917/1‑150 (MQ=60)
GGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGG > GWNJ‑0478:712:GW2002102894th:2:1115:1712:71006/1‑150 (MQ=60)
GCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCG > GWNJ‑0478:712:GW2002102894th:2:2107:10716:29945/1‑150 (MQ=60)
agaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTC < GWNJ‑0478:712:GW2002102894th:2:1207:14463:44721/89‑1 (MQ=60)
agcgagtgtctcgtgggctcggagatatgtataagagacaGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCC < GWNJ‑0478:712:GW2002102894th:2:1203:20729:86521/110‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacaGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCC < GWNJ‑0478:712:GW2002102894th:2:2203:1648:70742/120‑1 (MQ=60)
ATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAG < GWNJ‑0478:712:GW2002102894th:2:1115:12521:26981/150‑1 (MQ=60)
AGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGG < GWNJ‑0478:712:GW2002102894th:2:1202:18971:58606/150‑1 (MQ=60)
GTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCctgtctcttatacacatctc > GWNJ‑0478:712:GW2002102894th:2:2213:14323:8256/1‑130 (MQ=60)
caGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTG < GWNJ‑0478:712:GW2002102894th:2:2207:9843:51750/148‑1 (MQ=60)
cggaggatgtgtataagagacaGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGG < GWNJ‑0478:712:GW2002102894th:2:2102:19568:60783/128‑1 (MQ=60)
CCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccg > GWNJ‑0478:712:GW2002102894th:2:1210:1791:51464/1‑95 (MQ=60)
CCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTctgtctcttatacacatctccgagcccacgagacactcg > GWNJ‑0478:712:GW2002102894th:2:2116:4881:95481/1‑111 (MQ=60)
CCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCG > GWNJ‑0478:712:GW2002102894th:2:2111:1985:64609/1‑150 (MQ=60)
CCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCG > GWNJ‑0478:712:GW2002102894th:2:2115:6870:65924/1‑150 (MQ=60)
CACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGctgtctc > GWNJ‑0478:712:GW2002102894th:2:2108:8599:93248/1‑143 (MQ=60)
CACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGT > GWNJ‑0478:712:GW2002102894th:2:2208:13563:81517/1‑150 (MQ=60)
ACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTctgtctcttat > GWNJ‑0478:712:GW2002102894th:2:1207:12566:92448/1‑138 (MQ=60)
ACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTC > GWNJ‑0478:712:GW2002102894th:2:1112:12762:50710/1‑150 (MQ=60)
CAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATAC < GWNJ‑0478:712:GW2002102894th:2:2106:15726:17296/150‑1 (MQ=60)
CAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATAC < GWNJ‑0478:712:GW2002102894th:2:2206:9289:48102/150‑1 (MQ=60)
CAATTCGACGGAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATAC < GWNJ‑0478:712:GW2002102894th:2:1111:8401:66419/150‑1 (MQ=60)
GAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgctt > GWNJ‑0478:712:GW2002102894th:2:1109:12882:56586/1‑86 (MQ=60)
GAGGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATACGATGGCctgt > GWNJ‑0478:712:GW2002102894th:2:1214:12761:27463/1‑146 (MQ=60)
GGAGACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATACGATGGCTTTCTG > GWNJ‑0478:712:GW2002102894th:2:1107:12954:8236/1‑150 (MQ=60)
ACATGAAACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaatgacg > GWNJ‑0478:712:GW2002102894th:2:2110:5966:100859/1‑62 (MQ=60)
ACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATACGATGGCTTTCTGCTTGCCGTTG > GWNJ‑0478:712:GW2002102894th:2:1112:4886:64725/1‑149 (MQ=60)
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GCGAACTGGAGACATCGTTGCAGTAGGGCAATACCACGGGCGGCGTTCGCCGCCTGACATGGGGAGCCGTTCAGGCTCGCGTCCGCACGGGCACCACATAGAGTGCCTGACGGGCAATGACAATTCGACGGAGGAGACATG‑AACAGAAATGCGTGGCAATCGCCGCCGCGCTGGCGCTGCTCGCGCCGGCGCTGGCCAGTGCTGAAGTGAAGGTCGGCATTCTTGCCACCCTTTCGGGGCCGTCGGCCGATGTCGGGCGCGACCAATACGATGGCTTTCTGCTTGCCGTTG > AM260480/507283‑507573
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
