Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,135,859 |
+C |
intergenic (‑237/‑97) |
h16_B1889 ← / → h16_B1890 |
transcriptional regulator, IclR‑family/APC transporter, AAT family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,135,857 | 1 | . | C | 100.0%
| 155.4
/ NA
| 40 | intergenic (‑235/‑99) | h16_B1889/h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (19/21); total (19/21) |
AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAA > AM260480/2135724‑2135981
|
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 1:1056785/134‑1 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:561404/1‑134 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:780018/1‑134 (MQ=255)
gAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccc < 1:853432/134‑2 (MQ=255)
aaTTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGGCGACATGTACGGATAGGCCAACCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccctgcc < 1:1161392/134‑6 (MQ=255)
ttCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:2875/1‑122 (MQ=255)
ttCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 1:2875/122‑1 (MQ=255)
tGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 2:307880/111‑1 (MQ=255)
tGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 1:307880/1‑111 (MQ=255)
aGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 1:928555/134‑1 (MQ=255)
aGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 1:780018/133‑1 (MQ=255)
aGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAAAACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 1:613789/133‑1 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccc > 1:1165435/1‑90 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccc < 2:1165435/91‑2 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGa > 1:172352/1‑106 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGa < 2:172352/106‑1 (MQ=255)
tCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCt < 1:937709/134‑1 (MQ=255)
cGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAg < 1:561404/133‑1 (MQ=255)
tAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:813555/93‑1 (MQ=255)
tAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:813555/1‑93 (MQ=255)
ggCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGa < 1:1045321/133‑1 (MQ=255)
ccATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:771165/89‑1 (MQ=255)
ccATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:771165/1‑89 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:816318/86‑1 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:816318/1‑86 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAg < 2:1156328/122‑1 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAg > 1:1156328/1‑122 (MQ=255)
ccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAg > 1:583712/1‑134 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 2:783356/88‑1 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg > 1:783356/1‑88 (MQ=255)
cccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:567405/1‑50 (MQ=255)
cccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 1:567405/50‑1 (MQ=255)
cccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcgc < 1:752702/132‑1 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCgcagca > 1:515670/1‑132 (MQ=255)
gCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGgaga > 2:160920/1‑134 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 1:899722/68‑1 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 2:899722/1‑68 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg < 2:87553/92‑1 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg > 1:87553/1‑92 (MQ=255)
tACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTg < 2:986509/94‑1 (MQ=255)
tACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTg > 1:986509/1‑94 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:186173/57‑1 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:186173/1‑57 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATcc > 1:826951/1‑133 (MQ=255)
aCGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCcaaca < 1:160920/134‑1 (MQ=255)
ggCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAg > 2:240826/1‑97 (MQ=255)
ggCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAg < 1:240826/97‑1 (MQ=255)
cccAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAGGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCaacaac > 1:872386/1‑131 (MQ=255)
cccAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCaacaac > 1:35506/1‑131 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCaa < 1:968340/131‑1 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCaa > 2:968340/1‑131 (MQ=255)
tACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACacaa > 2:321789/1‑103 (MQ=255)
tACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACacaa < 1:321789/103‑1 (MQ=255)
|
AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAA > AM260480/2135724‑2135981
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTACATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCC > AM260480/2135711‑2135998
|
ttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CC < GWNJ‑0478:712:GW2002102894th:2:1205:13407:61179/73‑1 (MQ=60)
ttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCA < GWNJ‑0478:712:GW2002102894th:2:2214:9583:52076/79‑1 (MQ=60)
tttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTAT < GWNJ‑0478:712:GW2002102894th:2:2116:3230:40153/74‑1 (MQ=60)
GAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATAC < GWNJ‑0478:712:GW2002102894th:2:1101:7389:20589/150‑1 (MQ=60)
GAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATAC < GWNJ‑0478:712:GW2002102894th:2:2210:15213:81487/150‑1 (MQ=60)
tttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATAC < GWNJ‑0478:712:GW2002102894th:2:1216:17524:64763/81‑1 (MQ=60)
AGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGA < GWNJ‑0478:712:GW2002102894th:2:2116:9403:25265/150‑1 (MQ=60)
CAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGGCGACATGTACGGATAGGCCAACCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAG < GWNJ‑0478:712:GW2002102894th:2:2216:15222:68865/150‑1 (MQ=60)
ATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCtgtctctt > GWNJ‑0478:712:GW2002102894th:2:1203:8464:52343/1‑142 (MQ=60)
catacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAAC < GWNJ‑0478:712:GW2002102894th:2:2203:6436:89655/98‑1 (MQ=60)
CAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAAC < GWNJ‑0478:712:GW2002102894th:2:2204:9238:68665/150‑1 (MQ=60)
GTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGActgtctcttatacacatctccgagcccac > GWNJ‑0478:712:GW2002102894th:2:2216:4645:86892/1‑121 (MQ=60)
GTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCtgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:1110:15239:30237/1‑137 (MQ=60)
AAGCGATCCCCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAAAACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTAC < GWNJ‑0478:712:GW2002102894th:2:2102:10187:51560/149‑1 (MQ=60)
AAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTAC < GWNJ‑0478:712:GW2002102894th:2:2113:17872:74213/149‑1 (MQ=60)
GTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:2115:15022:39406/1‑123 (MQ=60)
GTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGA < GWNJ‑0478:712:GW2002102894th:2:2205:13285:23091/150‑1 (MQ=60)
ACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:2113:5524:31254/1‑119 (MQ=60)
TGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:2115:10852:51837/1‑116 (MQ=60)
TGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCT > GWNJ‑0478:712:GW2002102894th:2:2216:2944:46630/1‑148 (MQ=60)
GTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGC > GWNJ‑0478:712:GW2002102894th:2:2101:10178:58849/1‑150 (MQ=60)
ACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCG < GWNJ‑0478:712:GW2002102894th:2:1216:6316:37555/149‑1 (MQ=60)
GGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACctgtctcttatacacatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:2113:4117:90929/1‑118 (MQ=60)
AGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:2210:12740:22125/149‑1 (MQ=60)
GGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCAC > GWNJ‑0478:712:GW2002102894th:2:1215:16941:25414/1‑148 (MQ=60)
cggagatgtgtataagagacagATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGG < GWNJ‑0478:712:GW2002102894th:2:1115:2398:84545/127‑1 (MQ=60)
CTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCtgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1107:18879:51600/1‑123 (MQ=60)
CCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACctgtctcttatacacatctccgagcc > GWNJ‑0478:712:GW2002102894th:2:2206:20171:100556/1‑124 (MQ=60)
CCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACA < GWNJ‑0478:712:GW2002102894th:2:2110:10188:36509/148‑1 (MQ=60)
TGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgc > GWNJ‑0478:712:GW2002102894th:2:1113:16203:7336/1‑87 (MQ=60)
TGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCA > GWNJ‑0478:712:GW2002102894th:2:2115:21195:99555/1‑149 (MQ=60)
atgtgtataagagacaGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACC < GWNJ‑0478:712:GW2002102894th:2:1202:9532:41342/134‑1 (MQ=60)
CTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAGGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACC > GWNJ‑0478:712:GW2002102894th:2:2201:11425:19249/1‑147 (MQ=60)
CTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACC > GWNJ‑0478:712:GW2002102894th:2:1105:8387:27928/1‑147 (MQ=60)
CACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAA < GWNJ‑0478:712:GW2002102894th:2:1111:2331:69026/150‑1 (MQ=60)
GCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGG < GWNJ‑0478:712:GW2002102894th:2:2209:18432:95277/150‑1 (MQ=60)
GCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGG < GWNJ‑0478:712:GW2002102894th:2:1215:10771:41978/150‑1 (MQ=60)
gacagctgcCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCC < GWNJ‑0478:712:GW2002102894th:2:2214:9878:31188/141‑1 (MQ=60)
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CTACATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCC > AM260480/2135711‑2135998
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
