Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,843,580 |
+G |
intergenic (‑1/+68) |
pip ← / ← h16_B2516 |
prolyl aminopeptidase/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,843,579 | 1 | . | G | 100.0%
| 123.9
/ NA
| 32 | M1M (ATG→CTG) † | pip | prolyl aminopeptidase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (18/14); total (18/14) |
CGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACG > AM260480/2843447‑2843701
|
cgTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:63927/134‑1 (MQ=255)
gccgGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg < 1:94806/134‑1 (MQ=255)
cgGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 1:1061900/1‑132 (MQ=255)
ggCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCg < 2:222980/133‑1 (MQ=255)
cgcCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 1:972983/134‑1 (MQ=255)
gcCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAg > 2:744740/1‑134 (MQ=255)
aTGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa > 2:665968/1‑123 (MQ=255)
aTGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa < 1:665968/123‑1 (MQ=255)
aTGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAg > 1:13019/1‑133 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:891850/1‑94 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:891850/94‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 2:239165/1‑94 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 1:239165/94‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa > 1:676827/1‑117 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa < 2:676827/117‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcccg > 2:382824/1‑134 (MQ=255)
cGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGc < 1:624780/94‑1 (MQ=255)
cGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGc > 2:624780/1‑94 (MQ=255)
gCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCg < 1:744740/134‑1 (MQ=255)
ccGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:737795/1‑75 (MQ=255)
ccGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:737795/75‑1 (MQ=255)
gTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGc > 1:113119/1‑134 (MQ=255)
cGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg < 1:602404/49‑1 (MQ=38)
cGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 2:602404/1‑49 (MQ=38)
aTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCt > 2:323206/1‑134 (MQ=255)
cAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCAcc > 1:728909/1‑106 (MQ=255)
cAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCAcc < 2:728909/106‑1 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa > 1:177109/1‑59 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGaa < 2:177109/59‑1 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACg > 1:229686/1‑134 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACg > 1:362453/1‑134 (MQ=255)
aGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 2:151866/1‑35 (MQ=255)
aGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 1:151866/35‑1 (MQ=255)
|
CGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACG > AM260480/2843447‑2843701
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAG > AM260480/2843440‑2843728
|
ttattgtttcgttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1101:4104:100645/57‑1 (MQ=60)
CCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:1104:3804:9528/150‑1 (MQ=60)
GTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG > GWNJ‑0478:712:GW2002102894th:2:2212:10861:8826/1‑148 (MQ=60)
GTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatactgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:2112:5513:23619/1‑133 (MQ=60)
GAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatatgggctgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:2207:17422:23655/1‑127 (MQ=60)
CGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCAC < GWNJ‑0478:712:GW2002102894th:2:1107:11497:93483/150‑1 (MQ=60)
ttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCAC < GWNJ‑0478:712:GW2002102894th:2:2103:17975:76272/79‑1 (MQ=60)
ggctcggagatgtgtataagagacagGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCC < GWNJ‑0478:712:GW2002102894th:2:1115:8130:76891/124‑1 (MQ=60)
GCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCC < GWNJ‑0478:712:GW2002102894th:2:2206:20634:22212/150‑1 (MQ=60)
gtttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCC < GWNJ‑0478:712:GW2002102894th:2:1111:18324:21541/66‑1 (MQ=60)
ggctcggagatgtgtataagagacagAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGG < GWNJ‑0478:712:GW2002102894th:2:2105:7687:19621/124‑1 (MQ=60)
CTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGT > GWNJ‑0478:712:GW2002102894th:2:1101:5898:86180/1‑149 (MQ=60)
GTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCC < GWNJ‑0478:712:GW2002102894th:2:2107:3841:60037/150‑1 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccg > GWNJ‑0478:712:GW2002102894th:2:1211:6870:100260/1‑95 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgtctcttatacacatctccgagcc > GWNJ‑0478:712:GW2002102894th:2:2203:19134:42320/1‑124 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCtg > GWNJ‑0478:712:GW2002102894th:2:2106:16516:21722/1‑148 (MQ=60)
TAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatatgggctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtct > GWNJ‑0478:712:GW2002102894th:2:2211:1978:63756/1‑84 (MQ=60)
tttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAAC < GWNJ‑0478:712:GW2002102894th:2:1213:7483:20349/73‑1 (MQ=60)
CCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgtctcttatacacatctccgagcccacgagacactcgctaatc > GWNJ‑0478:712:GW2002102894th:2:2111:12180:59951/1‑105 (MQ=60)
ACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCC > GWNJ‑0478:712:GW2002102894th:2:1108:8012:4268/1‑150 (MQ=60)
AGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACC < GWNJ‑0478:712:GW2002102894th:2:2111:16166:94745/150‑1 (MQ=60)
GGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCtgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:2111:19508:14275/1‑137 (MQ=60)
aagagacaGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGC < GWNJ‑0478:712:GW2002102894th:2:1114:10576:84699/142‑1 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttct > GWNJ‑0478:712:GW2002102894th:2:1110:2586:57182/1‑90 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGC > GWNJ‑0478:712:GW2002102894th:2:1115:6368:31230/1‑150 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGC > GWNJ‑0478:712:GW2002102894th:2:1204:10425:95944/1‑150 (MQ=60)
GCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaa > GWNJ‑0478:712:GW2002102894th:2:2111:3814:62570/1‑79 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgctagaaaaaaaac > GWNJ‑0478:712:GW2002102894th:2:2106:2299:54618/1‑75 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAG < GWNJ‑0478:712:GW2002102894th:2:1107:18525:75830/150‑1 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACA > GWNJ‑0478:712:GW2002102894th:2:2113:1560:36258/1‑148 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACA > GWNJ‑0478:712:GW2002102894th:2:2215:21029:68817/1‑148 (MQ=60)
|
GGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAG > AM260480/2843440‑2843728
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
