Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
150 |
26.0 |
2053212 |
90.0% |
1847890 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AM260479 |
3,399,144 |
Δ1,321 bp |
|
[leuS]–h16_A3140 |
[leuS], h16_A3140 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AM260479 |
3399144–3400453 |
3400464 |
12–1321 |
18 [0] |
[0] 18 |
[leuS]–h16_A3140 |
[leuS],h16_A3140 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AM260479 |
= 3399143 | NA (NA) | 17 (0.710) |
15/198 |
0.4 |
NA |
noncoding (2/1313 nt) |
ISAE1 |
insertion sequence ISAE1 |
| ? | AM260479 |
3400465 = |
NA (NA) | intergenic (+32/+53) |
h16_A3140/dapB |
Transposase ISAE1/dihydrodipicolinate reductase |
GATK/CNVnator alignment
N/A
