mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 402,510 | G→T | A126E (GCG→GAG) | hprK ← | serine kinase of the HPr protein |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| RA | AM260479 | 500,512 | G→A | W23* (TGG→TAG) | h16_A0473 → | ABC‑type transporter, permease component: PAAT family |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 916,512 | T→C | V341A (GTG→GCG) | h16_A0836 → | predicted exporter of the RND superfamily |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,285,635 | G→C | G181R (GGC→CGC) | nadB → | L‑Aspartate oxidase |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,739,157 | C→A | W319C (TGG→TGT) | rpoA ← | DNA‑directed RNA polymerase alpha subunit |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,983,831 | C→T | D23N (GAC→AAC) | ntrX ← | response regulator containing a Fis‑type DNA‑binding domain, NtrX |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 164,760 | C→T | A15V (GCC→GTC) | acoR → | transcriptional regulator of acetoin catabolism,PspF‑family |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,422,560 | C→T | intergenic (+124/‑116) | h16_B2141 → / → h16_B2142 | ABC‑type transporter, permease component/Sodium/glutamate symporter |
| RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 89738 | 89821 | 84 | 3 [0] | [1] 3 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 98020 | 98040 | 21 | 2 [0] | [1] 3 | h16_A0083/h16_A0084 | outer membrane protein (porin)/cell division inhibitor MinE |
| * | * | ÷ | AM260479 | 156387 | 156423 | 37 | 2 [1] | [0] 2 | h16_A0142 | Enoyl‑CoA hydratase |
| * | * | ÷ | AM260479 | 253978 | 254024 | 47 | 2 [1] | [0] 3 | h16_A0240 | Acetyltransferase (GNAT) family |
| * | * | ÷ | AM260479 | 254320 | 254366 | 47 | 2 [1] | [0] 2 | [h16_A0241] | [h16_A0241] |
| * | * | ÷ | AM260479 | 378876 | 378904 | 29 | 2 [0] | [1] 3 | h16_A0360/h16_A0361 | response regulator with putative antiterminator output/putative fumarylacetoacetat hydroxylase |
| * | * | ÷ | AM260479 | 381493 | 381528 | 36 | 2 [0] | [0] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 381593 | 381674 | 82 | 2 [0] | [0] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 401601 | 401612 | 12 | 2 [0] | [1] 2 | h16_A0382 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 442977 | 443003 | 27 | 2 [1] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 522675 | 522729 | 55 | 3 [1] | [1] 3 | [ruvB] | [ruvB] |
| * | * | ÷ | AM260479 | 570425 | 570502 | 78 | 4 [0] | [0] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
| * | * | ÷ | AM260479 | 580159 | 580162 | 4 | 3 [0] | [0] 3 | h16_A0552 | Hypothetical protein |
| * | * | ÷ | AM260479 | 602917 | 602962 | 46 | 2 [0] | [1] 2 | [sua] | [sua] |
| * | * | ÷ | AM260479 | 605872 | 605954 | 83 | 2 [0] | [1] 2 | dacB | D‑Alanyl‑D‑alanine carboxypeptidase, S13 family |
| * | * | ÷ | AM260479 | 663334 | 663370 | 37 | 2 [0] | [0] 2 | h16_A0625 | outer membrane protein (porin) |
| * | * | ÷ | AM260479 | 718147 | 718163 | 17 | 2 [0] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 780145 | 780185 | 41 | 2 [1] | [1] 2 | [h16_A0723] | [h16_A0723] |
| * | * | ÷ | AM260479 | 789458 | 789472 | 15 | 3 [1] | [1] 3 | h16_A0729 | transcriptional regulator, LysR‑family |
| * | * | ÷ | AM260479 | 791381 | 791454 | 74 | 4 [1] | [0] 2 | [h16_A0732] | [h16_A0732] |
| * | * | ÷ | AM260479 | 804814 | 804839 | 26 | 2 [0] | [1] 3 | pilL2 | Type IV pilus protein histidine kinase/response regulator hybrid PilL |
| * | * | ÷ | AM260479 | 1017292 | 1017323 | 32 | 5 [1] | [1] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1185495 | 1185525 | 31 | 3 [0] | [1] 3 | h16_A1089 | Hypothetical protein |
| * | * | ÷ | AM260479 | 1206106 | 1206172 | 67 | 2 [0] | [0] 2 | h16_A1108 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1294294 | 1294353 | 60 | 4 [1] | [0] 4 | h16_A1190 | Hypothetical protein |
| * | * | ÷ | AM260479 | 1319153 | 1319188 | 36 | 2 [0] | [0] 4 | h16_A1213/suhB | conserved hypothetical protein/inositol monophosphatase |
| * | * | ÷ | AM260479 | 1381172 | 1381242 | 71 | 2 [0] | [1] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1402314 | 1402362 | 49 | 2 [0] | [1] 2 | h16_A1291/h16_A1292 | Isovaleryl‑CoA dehydrogenase/ATP‑dependent transcriptional regulator,MalT‑family |
| * | * | ÷ | AM260479 | 1578874 | 1578891 | 18 | 2 [0] | [0] 2 | [mfd] | [mfd] |
| * | * | ÷ | AM260479 | 1639393 | 1639446 | 54 | 2 [0] | [1] 5 | gatA3/h16_A1510 | Glutamyl/Aspartyl‑tRNA(Gln/Asp) amidotransferasesubunit A/predicted transcription regulator, contains HTH domain (MarR family) |
| * | * | ÷ | AM260479 | 1647020 | 1647055 | 36 | 2 [0] | [0] 2 | [ispZ] | [ispZ] |
| * | * | ÷ | AM260479 | 1714294 | 1714334 | 41 | 2 [1] | [0] 3 | h16_A1582 | DNA segregation ATPase FtsK/SpoIIIE related protein |
| * | * | ÷ | AM260479 | 1723487 | 1723513 | 27 | 2 [0] | [0] 2 | h16_A1589/h16_A1590 | transcriptional regulator, MocR family/hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 1790217 | 1790226 | 10 | 2 [0] | [1] 2 | h16_A1646 | probable extra‑cytoplasmic solute receptor |
| * | * | ÷ | AM260479 | 1953141 | 1953159 | 19 | 2 [1] | [0] 3 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
| * | * | ÷ | AM260479 | 2081620 | 2081676 | 57 | 4 [0] | [0] 2 | [h16_A1915] | [h16_A1915] |
| * | * | ÷ | AM260479 | 2166371 | 2166372 | 2 | 2 [0] | [0] 4 | cysC/nfnB2 | uncharacterized conserved protein, putative adenylylsulphate kinase/Nitroreductase |
| * | * | ÷ | AM260479 | 2426132 | 2426150 | 19 | 2 [0] | [1] 3 | [lytT] | [lytT] |
| * | * | ÷ | AM260479 | 2449851 | 2449871 | 21 | 2 [0] | [0] 2 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463514 | 2463544 | 31 | 2 [0] | [0] 3 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2481943 | 2481975 | 33 | 5 [0] | [0] 2 | h16_A2290 | acyl carrier protein phosphodiesterase |
| * | * | ÷ | AM260479 | 2745243 | 2745244 | 2 | 2 [0] | [0] 2 | h16_A2532 | TonB‑like protein, links inner and outer membranes |
| * | * | ÷ | AM260479 | 2756750 | 2756781 | 32 | 2 [0] | [0] 2 | [h16_A2548] | [h16_A2548] |
| * | * | ÷ | AM260479 | 2836213 | 2836299 | 87 | 3 [1] | [1] 2 | livK1 | ABC‑type transporter, periplasmic component: HAAT family |
| * | * | ÷ | AM260479 | 2999764 | 2999798 | 35 | 2 [0] | [1] 2 | nhaP | NhaP‑type Na+/H+ and K+/H+ antiporters with a unique C‑terminal domain |
| * | * | ÷ | AM260479 | 3026541 | 3026561 | 21 | 4 [0] | [0] 2 | h16_A2799/asmA | Dinucleotide‑utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1/Uncharacterized protein involved in outer membrane biogenesis |
| * | * | ÷ | AM260479 | 3032752 | 3032777 | 26 | 2 [1] | [1] 2 | h16_A2804 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3058188 | 3058320 | 133 | 3 [1] | [1] 3 | h16_A2830 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 3341377 | 3341439 | 63 | 2 [0] | [1] 5 | [h16_A3087] | [h16_A3087] |
| * | * | ÷ | AM260479 | 3360885 | 3360939 | 55 | 2 [0] | [1] 3 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3365813 | 3365835 | 23 | 2 [0] | [0] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3366899 | 3366963 | 65 | 2 [0] | [0] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3452011 | 3452052 | 42 | 4 [0] | [1] 3 | [h16_A3193] | [h16_A3193] |
| * | * | ÷ | AM260479 | 3462484 | 3462535 | 52 | 2 [0] | [0] 2 | [h16_A3204] | [h16_A3204] |
| * | * | ÷ | AM260479 | 3472987 | 3473010 | 24 | 6 [0] | [0] 2 | h16_A3218/h16_A3219 | transcriptional regulator, TetR/AcrR‑family/Hypothetical protein |
| * | * | ÷ | AM260479 | 3482480 | 3482511 | 32 | 2 [0] | [0] 2 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548179 | 3548203 | 25 | 2 [1] | [1] 2 | ftsI1 | peptidoglycan glycosyltransferase |
| * | * | ÷ | AM260479 | 3554483 | 3554526 | 44 | 6 [1] | [0] 3 | h16_A3287 | Hypothetical protein |
| * | * | ÷ | AM260479 | 3595970 | 3596001 | 32 | 2 [1] | [1] 5 | ung | Uracil‑DNA glycosylase |
| * | * | ÷ | AM260479 | 3597212 | 3597247 | 36 | 2 [0] | [0] 4 | h16_A3326 | ABC‑type transporter, duplicated permease domains: TauT family |
| * | * | ÷ | AM260479 | 3609146 | 3609166 | 21 | 3 [1] | [0] 5 | h16_A3334 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3722935 | 3722977 | 43 | 2 [1] | [1] 2 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
| * | * | ÷ | AM260479 | 3871547 | 3871596 | 50 | 2 [1] | [0] 2 | pyk2/h16_A3603 | pyruvate kinase/putative neutral zinc metallopeptidase |
| * | * | ÷ | AM260479 | 3979049 | 3979051 | 3 | 2 [0] | [0] 2 | lamB | Maltoporin‑like channel (LamB porin) |
| * | * | ÷ | AM260479 | 3979097 | 3979100 | 4 | 2 [0] | [0] 2 | lamB | Maltoporin‑like channel (LamB porin) |
| * | * | ÷ | AM260479 | 4004553 | 4004581 | 29 | 2 [0] | [0] 2 | h16_A3710 | response regulator, NarL‑family |
| * | * | ÷ | AM260480 | 81693 | 81753 | 61 | 3 [0] | [2] 4 | [h16_B0073] | [h16_B0073] |
| * | * | ÷ | AM260480 | 174665–175127 | 180000–175130 | 4–5336 | 3 [2] | [1] 3 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193561 | 193605 | 45 | 5 [1] | [0] 8 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 287714 | 287757 | 44 | 4 [2] | [1] 3 | h16_B0251/flhB1 | Lipoprotein/flagellar biosynthesis protein |
| * | * | ÷ | AM260480 | 463744 | 463754 | 11 | 3 [2] | [0] 4 | h16_B0405 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 496892 | 496935 | 44 | 7 [0] | [2] 4 | [nhaA] | [nhaA] |
| * | * | ÷ | AM260480 | 571266 | 571291 | 26 | 4 [2] | [0] 5 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 633601 | 633649 | 49 | 3 [2] | [2] 6 | [fliQ] | [fliQ] |
| * | * | ÷ | AM260480 | 656561 | 656581 | 21 | 5 [2] | [2] 8 | acrB8 | Cation/multidrug efflux pump |
| * | * | ÷ | AM260480 | 752003 | 752045 | 43 | 3 [2] | [2] 6 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 757332 | 757359 | 28 | 4 [2] | [2] 4 | [h16_B0678] | [h16_B0678] |
| * | * | ÷ | AM260480 | 814064 | 814171 | 108 | 3 [2] | [2] 4 | [h16_B0721]–[h16_B0722] | [h16_B0721],[h16_B0722] |
| * | * | ÷ | AM260480 | 860303 | 860337 | 35 | 3 [1] | [2] 4 | h16_B0761/h16_B0762 | transcriptional regulator, TetR/AcrR‑family/conserved hypothetical membrane protein |
| * | * | ÷ | AM260480 | 867738–869615 | 872743–869620 | 6–5006 | 3 [2] | [2] 3 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
| * | * | ÷ | AM260480 | 903465 | 903496 | 32 | 6 [2] | [1] 3 | h16_B0795 | Protocatechuate 3,4‑dioxygenase |
| * | * | ÷ | AM260480 | 1222279 | 1222284 | 6 | 4 [0] | [2] 3 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
| * | * | ÷ | AM260480 | 1235029 | 1235107 | 79 | 3 [2] | [2] 3 | h16_B1092 | thioredoxin reductase |
| * | * | ÷ | AM260480 | 1319226 | 1319272 | 47 | 3 [2] | [2] 4 | h16_B1167/h16_B1168 | Hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1434819 | 1434852 | 34 | 3 [2] | [2] 3 | h16_B1277 | hypothetical membrane associated protein |
| * | * | ÷ | AM260480 | 1465480 | 1465567 | 88 | 3 [2] | [2] 4 | h16_B1311 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1482269 | 1482290 | 22 | 3 [0] | [2] 4 | h16_B1335 | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| * | * | ÷ | AM260480 | 1681161 | 1681202 | 42 | 3 [2] | [2] 3 | [h16_B1496] | [h16_B1496] |
| * | * | ÷ | AM260480 | 1748456 | 1748519 | 64 | 4 [2] | [1] 5 | h16_B1557 | Glycosidase‑like protein |
| * | * | ÷ | AM260480 | 2442792 | 2442843 | 52 | 3 [2] | [2] 4 | h16_B2159 | predicted acyl‑CoA transferase/carnitine dehydratase |
| * | * | ÷ | AM260480 | 2459876 | 2459908 | 33 | 4 [0] | [2] 3 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2515838 | 2515910 | 73 | 3 [1] | [2] 3 | h16_B2217 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260480 | 2532178 | 2532244 | 67 | 4 [2] | [2] 4 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2608863 | 2608896 | 34 | 3 [1] | [1] 3 | [h16_B2307] | [h16_B2307] |
| * | * | ÷ | AY305378 | 1 | 94256–93028 | 93028–94256 | NA [0] | [1] 2 | hoxK–[PHG101] | hoxK,hoxG,hoxZ,PHG004,hoxM,hoxL,hoxO,hoxQ,hoxR,hoxT,hoxV,hypA1,hypB1,hypF1,hypC1,hypD1,hypE1,hypX,hoxA,hoxB,hoxC,hoxJ,hoxN1,PHG027,PHG028,PHG029,PHG030,PHG031,PHG032,PHG033,PHG034,PHG035,PHG036,PHG037,PHG038,PHG039,PHG040,PHG041,PHG042,PHG043,PHG044,PHG045,PHG046,PHG047,PHG048,PHG049,PHG050,PHG051,PHG052,PHG053,PHG054,PHG055,PHG056,PHG057,PHG058,PHG059,PHG060,PHG061,PHG062,hoxN2,PHG064,PHG065,PHG066,PHG067,PHG068,PHG069,PHG070,PHG071,hypF3,hypC2,gmhA,hypD2,hypE2,hypA3,hypB3,PHG079,PHG080,PHG081,PHG082,PHG083,PHG084,PHG085,PHG086,PHG087,hoxF,hoxU,hoxY,hoxH,hoxW,hoxI,hypA2,hypB2,hypF2,PHG097,PHG098,PHG099,[PHG100],[PHG101] |
| * | * | ÷ | AY305378 | 99527 | 99551 | 25 | 3 [0] | [0] 3 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 100038 | 100080 | 43 | 2 [0] | [1] 2 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 151827 | 151895 | 69 | 5 [1] | [0] 2 | [PHG153] | [PHG153] |
| * | * | ÷ | AY305378 | 156426 | 156478 | 53 | 2 [1] | [0] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 258596 | 258661 | 66 | 2 [1] | [0] 2 | norB | nitric oxide reductase qNor type |
| * | * | ÷ | AY305378 | 278080 | 278081 | 2 | 2 [0] | [0] 3 | PHG263 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 416233 | 452156 | 35924 | 23 [0] | [0] NA | [PHG397]–cbbLp | [PHG397],fadD2,fadD1,nagM2,PHG401,nagM5,nagM1,catC,catB1,PHG406,tniA,tniB,tniQ,PHG410,tnpA,tnpA,PHG413,PHG414,tnpA,cbbAp,cbbKp,cbbGp,cbbZp,cbbTp,cbbPp,cbbFp,cbbEp,cbbYp,cbbXp,cbbSp,cbbLp |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 104029 = | 16 (0.620) | 4 (0.170) | 4/194 | 1.8 | 23.9% | coding (825/945 nt) | h16_A0090 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 104096 = | 11 (0.470) | coding (892/945 nt) | h16_A0090 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | = 150241 | 13 (0.500) | 4 (0.170) | 4/200 | 1.9 | 23.4% | coding (706/843 nt) | h16_A0136 | transcriptional regulator, BAF‑family |
| ? | AM260479 | = 150273 | 14 (0.580) | coding (738/843 nt) | h16_A0136 | transcriptional regulator, BAF‑family | |||||
| * | ? | AM260479 | = 157815 | 15 (0.580) | 3 (0.130) +TGGCCGAGGGC |
3/192 | 2.1 | 20.5% | coding (797/999 nt) | h16_A0144 | probable extra‑cytoplasmic solute receptor |
| ? | AM260479 | 157908 = | 11 (0.430) | coding (704/999 nt) | h16_A0144 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260479 | 254557 = | 22 (0.850) | 5 (0.220) | 5/192 | 1.6 | 20.5% | coding (228/453 nt) | h16_A0241 | Uncharacterized protein, possibly involved in aromatic compounds catabolism |
| ? | AM260479 | 254640 = | 19 (0.820) | coding (311/453 nt) | h16_A0241 | Uncharacterized protein, possibly involved in aromatic compounds catabolism | |||||
| * | ? | AM260479 | 264197 = | 17 (0.660) | 6 (0.250) | 4/200 | 1.9 | 26.2% | intergenic (+105/‑81) | h16_A0251/h16_A0252 | predicted nucleoside‑diphosphate‑sugar epimerase/Glutathione S‑transferase |
| ? | AM260479 | 264238 = | 18 (0.750) | intergenic (+146/‑40) | h16_A0251/h16_A0252 | predicted nucleoside‑diphosphate‑sugar epimerase/Glutathione S‑transferase | |||||
| * | ? | AM260479 | = 330490 | 16 (0.620) | 4 (0.170) | 4/196 | 1.8 | 26.1% | coding (1408/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC |
| ? | AM260479 | = 330641 | 8 (0.340) | coding (1559/2553 nt) | nagF | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC | |||||
| * | ? | AM260479 | 564305 = | 11 (0.430) | 3 (0.120) | 3/204 | 2.2 | 21.1% | coding (156/1593 nt) | h16_A0537 | Uncharacterized protein conserved in bacteria |
| ? | AM260479 | 564328 = | 12 (0.490) | coding (179/1593 nt) | h16_A0537 | Uncharacterized protein conserved in bacteria | |||||
| * | ? | AM260479 | 1237377 = | 19 (0.740) | 4 (0.170) | 4/196 | 1.8 | 20.3% | coding (268/1035 nt) | h16_A1133 | transcriptional regulator, HrcA‑family |
| ? | AM260479 | 1237413 = | 14 (0.590) | coding (304/1035 nt) | h16_A1133 | transcriptional regulator, HrcA‑family | |||||
| * | ? | AM260479 | = 1268760 | 16 (0.620) | 4 (0.170) | 4/200 | 1.9 | 21.6% | coding (712/759 nt) | h16_A1168 | Dehydrogenase, related to short‑chain alcohol dehydrogenases |
| ? | AM260479 | = 1268894 | 14 (0.580) | coding (578/759 nt) | h16_A1168 | Dehydrogenase, related to short‑chain alcohol dehydrogenases | |||||
| * | ? | AM260479 | 1282088 = | 16 (0.620) | 3 (0.130) | 3/196 | 2.1 | 24.3% | coding (864/1896 nt) | edd1 | phosphogluconate dehydratase |
| ? | AM260479 | 1282173 = | 4 (0.170) | coding (949/1896 nt) | edd1 | phosphogluconate dehydratase | |||||
| * | ? | AM260479 | = 1634137 | 19 (0.740) | 4 (0.160) | 4/202 | 1.9 | 20.0% | coding (774/1299 nt) | dadA5 | D‑amino‑acid dehydrogenase |
| ? | AM260479 | = 1634156 | 14 (0.580) | coding (755/1299 nt) | dadA5 | D‑amino‑acid dehydrogenase | |||||
| * | ? | AM260479 | = 1931359 | 29 (1.120) | 5 (0.220) | 4/190 | 1.8 | 20.1% | coding (168/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin |
| ? | AM260479 | = 1931484 | 14 (0.610) | coding (293/1491 nt) | acrC4 | Cation/multidrug efflux system outer membrane porin | |||||
| * | ? | AM260479 | = 2064164 | 26 (1.010) | 7 (0.300) | 7/194 | 1.2 | 28.3% | coding (515/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 2064306 | 12 (0.510) | coding (657/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | = 2073258 | 12 (0.470) | 4 (0.190) +TTGGCGTTGCGCGCCAGCA |
4/176 | 1.7 | 28.9% | coding (1285/2613 nt) | acnM | Methyl‑cis‑aconitic acid hydratase/Aconitate hydratase |
| ? | AM260479 | 2073269 = | 12 (0.470) | coding (1296/2613 nt) | acnM | Methyl‑cis‑aconitic acid hydratase/Aconitate hydratase | |||||
| * | ? | AM260479 | = 2136628 | 13 (0.500) | 5 (0.220) | 5/190 | 1.6 | 30.7% | coding (295/1146 nt) | catB3 | muconate cyclo‑isomerase |
| ? | AM260479 | = 2136616 | 11 (0.480) | coding (283/1146 nt) | catB3 | muconate cyclo‑isomerase | |||||
| * | ? | AM260479 | = 2546841 | 14 (0.540) | 5 (0.210) | 3/200 | 2.2 | 23.8% | coding (840/1467 nt) | argAB | acetylglutamate kinase and acetyltransferase |
| ? | AM260479 | = 2546916 | 19 (0.790) | coding (915/1467 nt) | argAB | acetylglutamate kinase and acetyltransferase | |||||
| * | ? | AM260479 | = 2730346 | 4 (0.160) | 6 (0.260) | 4/194 | 1.8 | 58.2% | coding (905/1266 nt) | h16_A2518 | signal transduction protein |
| ? | AM260479 | = 2730369 | 5 (0.210) | coding (928/1266 nt) | h16_A2518 | signal transduction protein | |||||
| * | ? | AM260479 | = 2794519 | 10 (0.390) | 3 (0.130) | 3/196 | 2.1 | 22.9% | coding (992/1425 nt) | h16_A2587 | Na+/H+ antiporter NhaD or related arsenite permease |
| ? | AM260479 | = 2794560 | 11 (0.470) | coding (951/1425 nt) | h16_A2587 | Na+/H+ antiporter NhaD or related arsenite permease | |||||
| * | ? | AM260479 | 2807997 = | 12 (0.470) | 3 (0.130) | 3/194 | 2.1 | 20.1% | coding (964/2850 nt) | kdpD1 | Osmosensitive K+ channel histidine kinase |
| ? | AM260479 | 2808050 = | 13 (0.560) | coding (911/2850 nt) | kdpD1 | Osmosensitive K+ channel histidine kinase | |||||
| * | ? | AM260479 | 2825575 = | 9 (0.350) | 4 (0.170) | 4/196 | 1.8 | 31.7% | coding (1304/2856 nt) | fimV | tfp pilus assembly protein FimV |
| ? | AM260479 | 2825595 = | 9 (0.380) | coding (1284/2856 nt) | fimV | tfp pilus assembly protein FimV | |||||
| * | ? | AM260479 | 2905804 = | 12 (0.470) | 5 (0.220) | 5/192 | 1.6 | 21.4% | intergenic (‑206/+113) | h16_A2690/h16_A2691 | Hypothetical protein/hypothetical membrane associated protein |
| ? | AM260479 | 2905899 = | 26 (1.120) | intergenic (‑301/+18) | h16_A2690/h16_A2691 | Hypothetical protein/hypothetical membrane associated protein | |||||
| * | ? | AM260479 | = 3082658 | 10 (0.390) | 3 (0.130) | 3/196 | 2.1 | 21.3% | coding (560/1059 nt) | h16_A2858 | hypothetical membrane associated protein |
| ? | AM260479 | = 3082712 | 13 (0.550) | coding (506/1059 nt) | h16_A2858 | hypothetical membrane associated protein | |||||
| * | ? | AM260479 | 3446863 = | 15 (0.580) | 4 (0.170) | 4/194 | 1.8 | 26.2% | intergenic (+14/+9) | h16_A3186/h16_A3187 | aldehyde reductase, related to diketogulonate reductase/hypothetical membrane associated protein |
| ? | AM260479 | 3446884 = | 9 (0.390) | coding (411/423 nt) | h16_A3187 | hypothetical membrane associated protein | |||||
| * | ? | AM260479 | 3854038 = | 11 (0.430) | 5 (0.210) | 4/200 | 1.9 | 33.0% | intergenic (+52/+36) | h16_A3587/h16_A3588 | Hypothetical protein/putative peptidase, M20A subfamily |
| ? | AM260479 | 3854056 = | 10 (0.420) | intergenic (+70/+18) | h16_A3587/h16_A3588 | Hypothetical protein/putative peptidase, M20A subfamily | |||||
| * | ? | AM260479 | 3903250 = | 16 (0.620) | 6 (0.260) | 6/194 | 1.4 | 22.9% | coding (701/1965 nt) | h16_A3629 | Hypothetical protein |
| ? | AM260479 | 3903344 = | 26 (1.110) | coding (607/1965 nt) | h16_A3629 | Hypothetical protein | |||||
| * | ? | AM260480 | 128407 = | 16 (0.580) | 4 (0.160) | 4/196 | 2.0 | 20.2% | coding (823/1728 nt) | h16_B0110 | ABC‑type transporter, duplicated permease domains |
| ? | AM260480 | 128449 = | 17 (0.680) | coding (865/1728 nt) | h16_B0110 | ABC‑type transporter, duplicated permease domains | |||||
| * | ? | AM260480 | 189238 = | 16 (0.580) | 4 (0.160) | 4/200 | 2.0 | 20.5% | coding (766/927 nt) | h16_B0165 | MoxR‑like ATPase |
| ? | AM260480 | 189274 = | 16 (0.620) | coding (730/927 nt) | h16_B0165 | MoxR‑like ATPase | |||||
| * | ? | AM260480 | 251597 = | 5 (0.180) | 4 (0.160) | 4/196 | 2.0 | 28.0% | coding (497/1023 nt) | h16_B0225 | Integrase/recombinase protein |
| ? | AM260480 | 251666 = | 16 (0.640) | coding (566/1023 nt) | h16_B0225 | Integrase/recombinase protein | |||||
| * | ? | AM260480 | 300922 = | 18 (0.650) | 4 (0.160) | 4/194 | 2.0 | 20.9% | coding (481/744 nt) | flgF | flagellar basal body rod protein |
| ? | AM260480 | 301006 = | 14 (0.560) | coding (565/744 nt) | flgF | flagellar basal body rod protein | |||||
| * | ? | AM260480 | 758904 = | 16 (0.580) | 4 (0.160) | 4/196 | 2.0 | 20.7% | coding (214/867 nt) | h16_B0679 | conserved hypothetical protein |
| ? | AM260480 | 758993 = | 16 (0.640) | coding (125/867 nt) | h16_B0679 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 777301 | 10 (0.360) | 4 (0.150) | 4/206 | 2.1 | 30.0% | coding (4240/4659 nt) | rtxA2 | RTX toxin exported protein |
| ? | AM260480 | = 777320 | 9 (0.340) | coding (4259/4659 nt) | rtxA2 | RTX toxin exported protein | |||||
| * | ? | AM260480 | = 822945 | 6 (0.220) | 4 (0.160) | 4/194 | 2.0 | 35.7% | coding (421/885 nt) | h16_B0728 | predicted hydrolase/acyltransferase (alpha/beta‑hydrolase superfamily) |
| ? | AM260480 | = 822981 | 9 (0.360) | coding (457/885 nt) | h16_B0728 | predicted hydrolase/acyltransferase (alpha/beta‑hydrolase superfamily) | |||||
| * | ? | AM260480 | = 906054 | 21 (0.760) | 5 (0.200) | 5/196 | 1.7 | 22.1% | coding (234/474 nt) | h16_B0799 | transcriptional regulator, MarR‑family |
| ? | AM260480 | = 906098 | 16 (0.640) | coding (278/474 nt) | h16_B0799 | transcriptional regulator, MarR‑family | |||||
| * | ? | AM260480 | 1059377 = | 14 (0.510) | 3 (0.120) | 3/194 | 2.2 | 21.7% | coding (860/1179 nt) | h16_B0938 | Acyl‑CoA dehydrogenase |
| ? | AM260480 | 1059425 = | 9 (0.360) | coding (908/1179 nt) | h16_B0938 | Acyl‑CoA dehydrogenase | |||||
| * | ? | AM260480 | 1196561 = | 9 (0.330) | 4 (0.160) | 4/196 | 2.0 | 27.4% | coding (639/879 nt) | h16_B1060 | Hypothetical protein |
| ? | AM260480 | 1196660 = | 13 (0.520) | coding (738/879 nt) | h16_B1060 | Hypothetical protein | |||||
| * | ? | AM260480 | = 1262142 | 29 (1.060) | 8 (0.340) | 8/182 | 1.1 | 23.7% | coding (21/3237 nt) | acrB9 | Cation/multidrug efflux pump |
| ? | AM260480 | = 1262126 | 27 (1.160) | coding (5/3237 nt) | acrB9 | Cation/multidrug efflux pump | |||||
| * | ? | AM260480 | 1338131 = | 18 (0.650) | 4 (0.160) | 4/198 | 2.0 | 23.8% | coding (104/654 nt) | h16_B1183 | transcriptional regulator |
| ? | AM260480 | 1338178 = | 9 (0.350) | coding (151/654 nt) | h16_B1183 | transcriptional regulator | |||||
| * | ? | AM260480 | = 1370921 | 5 (0.180) | 5 (0.200) | 5/198 | 1.7 | 51.0% | coding (285/645 nt) | eda | 2‑Keto‑3‑deoxy‑6‑phosphogluconate aldolase |
| ? | AM260480 | = 1370971 | 5 (0.200) | coding (335/645 nt) | eda | 2‑Keto‑3‑deoxy‑6‑phosphogluconate aldolase | |||||
| * | ? | AM260480 | = 1678665 | 7 (0.250) | 3 (0.120) | 3/194 | 2.2 | 36.7% | coding (480/1770 nt) | h16_B1494 | conserved hypothetical protein |
| ? | AM260480 | = 1678692 | 4 (0.160) | coding (453/1770 nt) | h16_B1494 | conserved hypothetical protein | |||||
| * | ? | AM260480 | 1682275 = | 18 (0.650) | 4 (0.160) | 4/194 | 2.0 | 24.0% | coding (910/1269 nt) | frcR | transcriptional regulator, NagC‑family |
| ? | AM260480 | 1682359 = | 9 (0.360) | coding (994/1269 nt) | frcR | transcriptional regulator, NagC‑family | |||||
| * | ? | AM260480 | 1772445 = | 12 (0.440) | 3 (0.120) | 3/190 | 2.2 | 20.9% | coding (3215/5862 nt) | uvrA2 | Excinuclease ABC, ATPase subunit (A2) |
| ? | AM260480 | 1772482 = | 12 (0.490) | coding (3178/5862 nt) | uvrA2 | Excinuclease ABC, ATPase subunit (A2) | |||||
| * | ? | AM260480 | = 1896938 | 17 (0.620) | 4 (0.160) | 4/192 | 1.9 | 22.7% | coding (2209/3228 nt) | h16_B1683 | Non‑ribosomal peptide synthetase modules and related proteins |
| ? | AM260480 | = 1896963 | 12 (0.490) | coding (2184/3228 nt) | h16_B1683 | Non‑ribosomal peptide synthetase modules and related proteins | |||||
| * | ? | AM260480 | = 1912355 | 11 (0.400) | 4 (0.160) | 4/198 | 2.0 | 30.6% | coding (6247/9285 nt) | nrpA | Non‑ribosomal peptide synthetase |
| ? | AM260480 | = 1912391 | 8 (0.310) | coding (6211/9285 nt) | nrpA | Non‑ribosomal peptide synthetase | |||||
| * | ? | AM260480 | 1950990 = | 8 (0.290) | 3 (0.120) | 3/196 | 2.3 | 29.5% | coding (1259/1563 nt) | pntA4 | NAD(P) transhydrogenase subunit alpha |
| ? | AM260480 | 1951044 = | 7 (0.280) | coding (1205/1563 nt) | pntA4 | NAD(P) transhydrogenase subunit alpha | |||||
| * | ? | AM260480 | 2153774 = | 12 (0.440) | 6 (0.240) | 4/196 | 2.0 | 33.4% | coding (202/420 nt) | h16_B1907 | conserved hypothetical protein |
| ? | AM260480 | 2153856 = | 13 (0.520) | coding (284/420 nt) | h16_B1907 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 2305176 | 15 (0.550) | 5 (0.190) | 5/208 | 1.8 | 21.5% | coding (1465/2256 nt) | cheA2Y2 | chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid) |
| ? | AM260480 | 2305200 = | 22 (0.820) | coding (1489/2256 nt) | cheA2Y2 | chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid) | |||||
| * | ? | AM260480 | 2405358 = | 14 (0.510) | 4 (0.160) | 4/200 | 2.0 | 21.0% | intergenic (‑74/+114) | h16_B2126/h16_B2127 | Amidase/MFS transporter, ACS family |
| ? | AM260480 | 2405400 = | 17 (0.660) | intergenic (‑116/+72) | h16_B2126/h16_B2127 | Amidase/MFS transporter, ACS family | |||||
| * | ? | AM260480 | 2412749 = | 18 (0.650) | 6 (0.240) | 6/192 | 1.5 | 23.9% | intergenic (+8/‑162) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein |
| ? | AM260480 | 2412849 = | 22 (0.890) | intergenic (+108/‑62) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein | |||||
| * | ? | AM260480 | = 2485169 | 7 (0.250) | 3 (0.120) | 3/196 | 2.3 | 25.6% | coding (1897/2424 nt) | h16_B2195 | signal transduction histidine kinase containing CHASE2 sensor domain |
| ? | AM260480 | = 2485189 | 11 (0.440) | coding (1877/2424 nt) | h16_B2195 | signal transduction histidine kinase containing CHASE2 sensor domain | |||||
| * | ? | AM260480 | 2564349 = | 11 (0.400) | 3 (0.130) | 3/208 | 1.4 | 25.3% | coding (1361/3738 nt) | narG2 | respiratory nitrate reductase alpha chain (NarG) |
| ? | AY305378 | 288727 = | 7 (0.340) | coding (1384/3762 nt) | narG | respiratory nitrate reductase catalytic subunit | |||||
| * | ? | AM260480 | 2644743 = | 10 (0.360) | 3 (0.120) | 3/194 | 2.2 | 29.9% | coding (1101/2025 nt) | narX2 | signal transduction histidine kinase,nitrate/nitrite‑specific |
| ? | AM260480 | 2644884 = | 5 (0.200) | coding (1242/2025 nt) | narX2 | signal transduction histidine kinase,nitrate/nitrite‑specific | |||||
| * | ? | AM260480 | 2789937 = | 14 (0.510) | 3 (0.120) | 3/198 | 2.3 | 20.7% | coding (147/690 nt) | h16_B2467 | transcriptional regulator, ArsR‑family |
| ? | AM260480 | 2789981 = | 10 (0.390) | coding (191/690 nt) | h16_B2467 | transcriptional regulator, ArsR‑family | |||||
| * | ? | AM260480 | = 2824906 | 9 (0.330) | 4 (0.160) | 4/198 | 2.0 | 24.8% | coding (1105/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component |
| ? | AM260480 | = 2824939 | 16 (0.630) | coding (1072/1584 nt) | h16_B2500 | sulfite reductase [NADPH] flavoprotein alpha‑component | |||||
| * | ? | AM260480 | 2839984 = | 16 (0.580) | 4 (0.160) | 4/200 | 2.0 | 22.3% | coding (543/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family |
| ? | AM260480 | 2840041 = | 13 (0.510) | coding (486/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260480 | = 2899578 | 18 (0.650) | 5 (0.190) | 5/200 | 1.8 | 21.8% | coding (918/1281 nt) | h16_B2569 | Putative MFS transporter |
| ? | AM260480 | = 2899591 | 19 (0.740) | coding (905/1281 nt) | h16_B2569 | Putative MFS transporter | |||||
| * | ? | AY305378 | 93025 = | NA (NA) | 23 (1.080) | 19/214 | 0.1 | 100% | noncoding (1/1313 nt) | ISAE1 | repeat region |
| ? | AY305378 | = 416232 | 0 (0.000) | coding (13/462 nt) | PHG397 | conserved hypothetical protein | |||||