Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
146 |
27.9 |
2327082 |
89.7% |
2087392 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,843,580 |
+G |
intergenic (‑1/+68) |
pip ← / ← h16_B2516 |
prolyl aminopeptidase/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,843,579 | 1 | . | G | 100.0%
| 170.4
/ NA
| 44 | M1M (ATG→CTG) † | pip | prolyl aminopeptidase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (28/16); total (28/16) |
CGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACG > AM260480/2843447‑2843701
|
cgTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:823170/134‑1 (MQ=255)
cgTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:1038634/134‑1 (MQ=255)
cgTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:381784/134‑1 (MQ=255)
cgTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 2:601907/134‑1 (MQ=255)
cAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 2:218297/130‑1 (MQ=255)
cAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g > 1:218297/1‑130 (MQ=255)
cgGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 2:640679/1‑132 (MQ=255)
gCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 2:700118/1‑130 (MQ=255)
ggCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCg < 1:353982/133‑1 (MQ=255)
cgcCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 1:700118/134‑1 (MQ=255)
cGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAg < 1:640679/134‑1 (MQ=255)
agtagATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCcaca < 1:913067/116‑1 (MQ=255)
agtagATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCcaca > 2:913067/1‑116 (MQ=255)
gCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAg > 2:605501/1‑134 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 1:455836/1‑86 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg < 2:455836/86‑1 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcc > 2:131821/1‑134 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcc > 2:709322/1‑134 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcc > 1:578991/1‑134 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGCGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGga > 1:240002/1‑86 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGga < 2:240002/86‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:369452/94‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:369452/1‑94 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcccg > 2:787729/1‑134 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcccg > 1:92557/1‑134 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g > 2:336527/1‑70 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:336527/70‑1 (MQ=255)
gACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 2:622019/64‑1 (MQ=255)
gACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g > 1:622019/1‑64 (MQ=255)
aTCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑gga > 2:556121/1‑61 (MQ=255)
aTCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑gga < 1:556121/63‑3 (MQ=255)
cAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCgg > 2:654857/1‑134 (MQ=255)
gTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGAGCAAGGCCGGCATGGATATGGGTCTACGgaga < 2:17416/72‑1 (MQ=255)
gTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGAGCAAGGCCGGCATGGATATGGGTCTACGgaga > 1:17416/1‑72 (MQ=255)
ccGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt > 2:7958/1‑109 (MQ=255)
ccGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt < 1:7958/109‑1 (MQ=255)
ggTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCg > 2:1149238/1‑134 (MQ=255)
tttCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:521537/1‑71 (MQ=255)
tttCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:521537/71‑1 (MQ=255)
aTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCt > 1:537271/1‑134 (MQ=255)
tCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAg > 2:102853/1‑134 (MQ=255)
aTAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAAcc > 2:1129596/1‑134 (MQ=255)
agagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCca > 2:185295/1‑51 (MQ=39)
agagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCca < 1:185295/51‑1 (MQ=39)
gagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACcgcg < 1:787729/134‑1 (MQ=255)
cgcAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTc < 2:352036/105‑1 (MQ=255)
cgcAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTc > 1:352036/1‑105 (MQ=255)
cAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGAc > 2:683025/1‑134 (MQ=255)
cAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGAc > 1:1052037/1‑134 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:1041399/36‑1 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:1041399/1‑36 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt < 2:1040838/70‑1 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt > 1:1040838/1‑70 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACg > 1:230123/1‑134 (MQ=255)
aGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCa > 2:2688/1‑106 (MQ=255)
aGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCa < 1:2688/106‑1 (MQ=255)
|
CGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACG > AM260480/2843447‑2843701
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACCGGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAGG > AM260480/2843435‑2843729
|
ttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggat < GWNJ‑0478:712:GW2002102894th:2:1212:9009:86930/73‑4 (MQ=60)
ACCGGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATAT > GWNJ‑0478:712:GW2002102894th:2:1112:21084:51978/1‑150 (MQ=60)
atattggtttcttcttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:2116:5220:47726/57‑1 (MQ=60)
GGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1102:5013:59027/150‑1 (MQ=60)
ttttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1210:12797:99365/65‑1 (MQ=60)
agttggtctttttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1206:11247:73420/57‑1 (MQ=60)
ttgtgttttgaatttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGT < GWNJ‑0478:712:GW2002102894th:2:2215:1585:43414/58‑1 (MQ=60)
cctctcctgtattttgtttttgtttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:1214:13580:35783/47‑1 (MQ=60)
CCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:2115:7571:68669/150‑1 (MQ=60)
CCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:2211:7043:86267/150‑1 (MQ=60)
CCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:1207:17909:75772/150‑1 (MQ=60)
acgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:1205:9417:11154/100‑1 (MQ=60)
gacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAG < GWNJ‑0478:712:GW2002102894th:2:1214:18646:68952/93‑1 (MQ=60)
ccagcaccgatttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAG < GWNJ‑0478:712:GW2002102894th:2:2110:9850:59158/63‑1 (MQ=60)
actccccctttgtttattttttttgtttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagcggcatgGATATGGGTCTACGGAGATCGGGAGCCACAGTGTAC < GWNJ‑0478:712:GW2002102894th:2:2107:2276:26558/36‑1 (MQ=60)
TGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTAC < GWNJ‑0478:712:GW2002102894th:2:1204:6805:14055/149‑1 (MQ=60)
GCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCC < GWNJ‑0478:712:GW2002102894th:2:2108:16259:20488/150‑1 (MQ=60)
ttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAG < GWNJ‑0478:712:GW2002102894th:2:1110:12643:81360/82‑1 (MQ=60)
acaGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGG < GWNJ‑0478:712:GW2002102894th:2:2202:12787:72569/147‑1 (MQ=60)
GCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGA < GWNJ‑0478:712:GW2002102894th:2:2105:5783:65306/150‑1 (MQ=60)
TAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:1211:6552:80489/1‑116 (MQ=60)
TAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCC > GWNJ‑0478:712:GW2002102894th:2:1216:7321:79528/1‑150 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGCGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:1115:16664:59269/1‑116 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgtctcttatacacatctccgagcc > GWNJ‑0478:712:GW2002102894th:2:1207:3504:7655/1‑124 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGC > GWNJ‑0478:712:GW2002102894th:2:1107:17831:68133/1‑150 (MQ=60)
GACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgt > GWNJ‑0478:712:GW2002102894th:2:2102:19343:51800/1‑94 (MQ=60)
ataagagacaGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAAC < GWNJ‑0478:712:GW2002102894th:2:1101:7997:52980/140‑1 (MQ=60)
TCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGAGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGctgtctcttatacacatctccgagcccacgagacactcgctaatctcg > GWNJ‑0478:712:GW2002102894th:2:1103:8715:13912/1‑102 (MQ=60)
gagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACAC < GWNJ‑0478:712:GW2002102894th:2:2104:12292:52897/103‑1 (MQ=60)
CATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgt > GWNJ‑0478:712:GW2002102894th:2:1215:10013:8347/1‑101 (MQ=60)
cggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggGATATGGGTCTACGGAGATCGGGAGCCACCGTGTACGCCGGAGGGAACGTCAAACAGTAGACCGCCCCTTAACCGGCGAACACCGCCTTCACCC < GWNJ‑0478:712:GW2002102894th:2:2116:9031:20205/94‑1 (MQ=60)
GTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTC > GWNJ‑0478:712:GW2002102894th:2:1215:2664:81400/1‑150 (MQ=60)
gtataagagacaGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCG < GWNJ‑0478:712:GW2002102894th:2:1101:4533:19133/137‑1 (MQ=60)
TCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCctgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1204:20631:2590/1‑135 (MQ=60)
GGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACG > GWNJ‑0478:712:GW2002102894th:2:2210:4990:57377/1‑150 (MQ=60)
gagatgtgtataagagacagcggcatgGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGC < GWNJ‑0478:712:GW2002102894th:2:2202:19756:55140/123‑1 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2211:13674:100693/1‑66 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgt > GWNJ‑0478:712:GW2002102894th:2:2211:7235:97553/1‑101 (MQ=60)
GGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGC > GWNJ‑0478:712:GW2002102894th:2:1115:11449:11714/1‑150 (MQ=60)
AGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCG < GWNJ‑0478:712:GW2002102894th:2:2113:17037:87719/150‑1 (MQ=60)
GGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGC > GWNJ‑0478:712:GW2002102894th:2:2111:5290:81512/1‑150 (MQ=60)
GTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCG > GWNJ‑0478:712:GW2002102894th:2:1216:9063:17684/1‑150 (MQ=60)
CATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGAC < GWNJ‑0478:712:GW2002102894th:2:2106:5596:17969/150‑1 (MQ=60)
atgGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACA < GWNJ‑0478:712:GW2002102894th:2:2216:13905:33468/147‑1 (MQ=60)
GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAGG > GWNJ‑0478:712:GW2002102894th:2:1116:17928:97731/1‑150 (MQ=60)
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CACCGGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAGG > AM260480/2843435‑2843729
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
