breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA AM260479 159,885 Δ1 bp coding (149/939 nt) h16_A0146 → conserved hypothetical protein
RA AM260479 208,932 A→C H322Q (CAT→CAG)  h16_A0195 ← Putative GTPase (G3E family)
RA AM260479 208,953 A→C V315V (GTT→GTG)  h16_A0195 ← Putative GTPase (G3E family)
RA AM260479 245,288 T→G L247V (TTG→GTG)  betA2 → choline dehydrogenase
RA AM260479 275,969 +C coding (268/558 nt) h16_A0264 ← Hypothetical protein
RA AM260479 342,407 T→C L180L (TTG→CTG)  amtB → ammonium transporter
RA AM260479 406,488 G→T L70I (CTC→ATC)  h16_A0388 ← ABC‑type transporter, ATPase component: HAAT family
RA AM260479 452,997 Δ1 bp intergenic (‑22/+116) h16_A0432 ← / ← coxF Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor
RA AM260479 500,512 G→A W23* (TGG→TAG)  h16_A0473 → ABC‑type transporter, permease component: PAAT family
RA AM260479 518,612 G→C intergenic (+17/‑48) h16_A0492 → / → pgam2 Phospholipid‑binding protein/phosphoglycerate mutase 2 protein
RA AM260479 547,818 +C intergenic (‑10/+27) glyS ← / ← h16_A0522 Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein
RA AM260479 547,839 Δ1 bp intergenic (‑31/+6) glyS ← / ← h16_A0522 Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein
RA AM260479 547,879 2 bp→GA coding (595‑596/630 nt) h16_A0522 ← conserved hypothetical protein
RA AM260479 561,006 +G intergenic (+9/+38) h16_A0532 → / ← h16_A0533 conserved hypothetical protein/universal stress protein, UspA family
RA AM260479 564,366 C→G P73A (CCC→GCC)  h16_A0537 → Uncharacterized protein conserved in bacteria
RA AM260479 581,821 +C coding (117/1734 nt) h16_A0555 → zinc metalloprotease
RA AM260479 582,589 T→G H295Q (CAT→CAG)  h16_A0555 → zinc metalloprotease
RA AM260479 582,759 G→T C352F (TGT→TTT)  h16_A0555 → zinc metalloprotease
RA AM260479 619,859 G→T H108N (CAC→AAC)  acrA1 ← Cation/multidrug efflux system, mebrane‑fusion component
RA AM260479 628,642 Δ1 bp coding (756/1206 nt) h16_A0595 ← Uncharacterized Fe‑S protein
RA AM260479 628,654 +C coding (744/1206 nt) h16_A0595 ← Uncharacterized Fe‑S protein
RA AM260479 637,111 +G intergenic (‑164/+218) adk ← / ← kdsB adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase
RA AM260479 724,768 +C coding (82/669 nt) lysE → lysine efflux permease
RA AM260479 735,524 +G intergenic (‑409/+175) h16_A0685 ← / ← h16_A0686 hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein
RA AM260479 782,330 +G intergenic (‑680/‑42) h16_A0723 ← / → h16_A0724 hypothetical membrane protein/hypothetical membrane protein
RA AM260479 782,333 +A intergenic (‑683/‑39) h16_A0723 ← / → h16_A0724 hypothetical membrane protein/hypothetical membrane protein
RA AM260479 787,769 +T intergenic (‑549/+743) h16_A0728 ← / ← h16_A0729 response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family
RA AM260479 787,882 +T intergenic (‑662/+630) h16_A0728 ← / ← h16_A0729 response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family
RA AM260479 916,512 T→C V341A (GTG→GCG)  h16_A0836 → predicted exporter of the RND superfamily
MC JC AM260479 973,838 Δ1,320 bp [h16_A0881]–h16_A0882 [h16_A0881], h16_A0882
RA AM260479 1,042,407 T→G K131N (AAA→AAC)  h16_A0947 ← Coproporphyrinogen III oxidase, Fe‑S oxidoreductase
RA AM260479 1,056,947 +G intergenic (+211/‑15) h16_A0964 → / → h16_A0965 conserved hypothetical protein/conserved hypothetical protein
RA AM260479 1,071,935 +G coding (626/627 nt) h16_A0979 → Hypothetical protein
RA AM260479 1,071,996 +G intergenic (+60/‑123) h16_A0979 → / → h16_A0980 Hypothetical protein/Hypothetical protein
RA AM260479 1,076,499 C→T P267L (CCG→CTG)  cpaF3 → flp pilus assembly ATPase CpaF
RA AM260479 1,076,517 C→T P273L (CCG→CTG)  cpaF3 → flp pilus assembly ATPase CpaF
RA AM260479 1,081,436 +C coding (437/447 nt) h16_A0989 → Hypothetical protein
RA AM260479 1,081,530 T→C L30L (TTG→CTG)  h16_A0990 → outer membrane protein and related peptidoglycan‑associated (lipo)proteins
RA AM260479 1,089,440 Δ1 bp intergenic (+115/‑17) h16_A0996 → / → h16_A0997 FAD/FMN‑containing dehydrogenase/conserved hypothetical protein
RA AM260479 1,112,158 Δ1 bp coding (2295/2469 nt) xdhB1 ← xanthine dehydrogenase, subunit B
RA AM260479 1,167,791 T→C intergenic (+238/‑365) h16_A1070 → / → cyoA1 acyl dehydratase/bo3‑type quinol oxidase, subunit II
RA AM260479 1,191,426 Δ1 bp coding (350/390 nt) h16_A1095 ← Hypothetical protein
RA AM260479 1,191,771 Δ1 bp coding (5/390 nt) h16_A1095 ← Hypothetical protein
RA AM260479 1,231,117 Δ1 bp coding (2606/2652 nt) glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,142 Δ1 bp coding (2631/2652 nt) glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,143 C→G P878A (CCC→GCC)  glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,177 Δ1 bp intergenic (+14/‑201) glnE → / → h16_A1128 glutamine synthetase adenylyltransferase/Membrane protein
RA AM260479 1,231,226 2 bp→CA intergenic (+63/‑151) glnE → / → h16_A1128 glutamine synthetase adenylyltransferase/Membrane protein
RA AM260479 1,240,057 +T intergenic (‑57/‑218) h16_A1136 ← / → grpE conserved hypothetical protein/molecular chaperone GrpE
RA AM260479 1,354,645 +C intergenic (+98/‑15) h16_A1248 → / → h16_A1249 predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein
RA AM260479 1,402,540 C→G G893A (GGC→GCC)  h16_A1292 ← ATP‑dependent transcriptional regulator,MalT‑family
RA AM260479 1,464,365 Δ1 bp coding (49/552 nt) h16_A1354 → conserved hypothetical protein
RA AM260479 1,464,433 A→G Q39Q (CAA→CAG)  h16_A1354 → conserved hypothetical protein
RA AM260479 1,464,435 T→C L40P (CTG→CCG)  h16_A1354 → conserved hypothetical protein
MC JC AM260479 1,464,441 Δ37 bp coding (125‑161/552 nt) h16_A1354 → conserved hypothetical protein
RA AM260479 1,492,923 T→C L191L (TTG→CTG)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,492,953 T→G S201A (TCA→GCA)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,493,307 T→G F319V (TTC→GTC)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,744,688 G→C G211A (GGC→GCC)  h16_A1608 → conserved hypothetical protein containing von Willebrand factor (vWF) type A
RA AM260479 1,841,200 +G intergenic (‑2736/‑2680) h16_A1684 ← / → ycaC conserved hypothetical protein/YcaC related amidohydrolase
RA AM260479 2,016,501 T→C V678V (GTT→GTC)  h16_A1857 → Uncharacterized protein involved in exopolysaccharide biosynthesis
RA AM260479 2,111,013 +G coding (553/1089 nt) h16_A1942 → Hypothetical protein
RA AM260479 2,111,023 +G coding (563/1089 nt) h16_A1942 → Hypothetical protein
RA AM260479 2,253,193 +C coding (243/258 nt) h16_A2071 → Hypothetical protein
RA AM260479 2,274,430 C→G G565G (GGG→GGC)  h16_A2092 ← Lysophospholipase, contains weak SAM‑dependent methyltransferase domain
RA AM260479 2,303,559 A→C S217R (AGT→AGG)  h16_A2116 ← Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily
RA AM260479 2,517,378 T→G P77A (CCA→GCC)  zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,517,380 G→C P77A (CCA→GCC)  zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,517,386 A→G Y75H (TAT→CAT)  zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,579,212 G→C A121A (GCC→GCG)  h16_A2374 ← Metallopeptidase, M23B subfamily
RA AM260479 2,579,243 A→G I111T (ATT→ACT)  h16_A2374 ← Metallopeptidase, M23B subfamily
RA AM260479 2,580,039 A→G R155R (CGT→CGC)  h16_A2375 ← Protein‑L‑isoaspartate carboxylmethyltransferase
RA AM260479 2,594,082 T→C Q124Q (CAA→CAG)  cR ← Recombinational DNA repair protein (RecF pathway)
RA AM260479 2,594,128 Δ1 bp coding (326/957 nt) cR ← Recombinational DNA repair protein (RecF pathway)
RA AM260479 2,616,505 C→G A45G (GCC→GGC)  h16_A2404 → predicted esterase of the alpha‑beta hydrolase superfamily
RA AM260479 2,787,923 +C intergenic (+165/‑55) cafA2 → / → moaA1 Ribonuclease G and E/molybdopterin biosynthesis protein
RA AM260479 2,907,305 2 bp→AT coding (181‑182/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,313 Δ1 bp coding (189/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,329 Δ1 bp coding (205/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,333 Δ1 bp coding (209/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,955,197 Δ1 bp coding (1034/1071 nt) h16_A2735 → phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit
RA AM260479 3,247,959 2 bp→CA coding (723‑724/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,987 Δ1 bp coding (751/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,992 Δ1 bp coding (756/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,999 Δ1 bp coding (763/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,007 Δ1 bp coding (771/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,010 C→G A258A (GCC→GCG)  h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,045 Δ1 bp coding (809/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,064 +A intergenic (+15/‑203) h16_A3001 → / → hemK1 transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors
RA AM260479 3,248,092 G→C intergenic (+43/‑175) h16_A3001 → / → hemK1 transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors
RA AM260479 3,285,635 G→C G181R (GGC→CGC)  nadB → L‑Aspartate oxidase
RA AM260479 3,301,576 +G intergenic (+45/‑146) lspA → / → dfp lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase
RA AM260479 3,302,920 +C coding (1199/1251 nt) dfp → phosphopantothenoylcysteine synthetase/decarboxylase
RA AM260479 3,333,763 +G coding (5/615 nt) serB2 → phosphoserine phosphatase
MC JC AM260479 3,399,144 Δ1,321 bp [leuS]–h16_A3140 [leuS], h16_A3140
RA AM260479 3,461,712 +G coding (823/969 nt) h16_A3204 ← transcriptional regulator, LysR‑family
RA AM260479 3,515,018 C→G noncoding (32/75 nt) tRNA‑Pro (CGG) → tRNA‑Pro
RA AM260479 3,515,314 Δ1 bp intergenic (+253/‑570) tRNA‑Pro (CGG) → / → pilB tRNA‑Pro/Type IV pilus assembly protein PilB
RA AM260479 3,515,428 +C intergenic (+367/‑456) tRNA‑Pro (CGG) → / → pilB tRNA‑Pro/Type IV pilus assembly protein PilB
RA AM260479 3,529,526 +G intergenic (‑40/‑264) secA ← / → h16_A3265 preprotein translocase subunit SecA/Hypothetical protein
RA AM260479 3,529,607 +C intergenic (‑121/‑183) secA ← / → h16_A3265 preprotein translocase subunit SecA/Hypothetical protein
RA AM260479 3,602,642 +A intergenic (‑39/+87) h16_A3328 ← / ← h16_A3329 conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase)
RA AM260479 3,602,688 (G)6→5 intergenic (‑85/+41) h16_A3328 ← / ← h16_A3329 conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase)
RA AM260479 3,615,716 +C intergenic (+42/‑147) prfA → / → h16_A3341 protein chain release factor A (RF‑1)/Hypothetical protein
RA AM260479 3,615,722 +A intergenic (+48/‑141) prfA → / → h16_A3341 protein chain release factor A (RF‑1)/Hypothetical protein
RA AM260479 3,720,402 G→T D170Y (GAC→TAC)  h16_A3441 → periplasmic multimodular transpeptidase/transglycosylase
RA AM260479 3,905,524 G→C A1285G (GCC→GGC)  putA ← bifunctional proline dehydrogenase and proline oxidase
RA AM260479 3,972,184 +C intergenic (‑136/‑395) h16_A3682 ← / → h16_A3683 putative methyltransferase/Hypothetical protein
RA AM260479 3,983,831 C→T D23N (GAC→AAC)  ntrX ← response regulator containing a Fis‑type DNA‑binding domain, NtrX
RA AM260479 3,998,635 +C intergenic (‑221/+527) h16_A3705 ← / ← h16_A3706 transcriptional regulator, LysR‑family/conserved hypothetical protein
RA AM260480 69,908 +G intergenic (+89/‑184) h16_B0060 → / → h16_B0061 conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component
RA AM260480 153,689 +G intergenic (‑67/+93) h16_B0133 ← / ← h16_B0134 conserved hypothetical protein/outer membrane protein (porin)
RA AM260480 157,096 +G intergenic (‑26/+41) h16_B0136 ← / ← h16_B0137 cysteine desulfurase/conserved hypothetical membrane protein
RA AM260480 159,381 +G intergenic (‑13/‑342) h16_B0138 ← / → h16_B0139 transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein
RA AM260480 159,389 +G intergenic (‑21/‑334) h16_B0138 ← / → h16_B0139 transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein
RA AM260480 164,760 C→T A15V (GCC→GTC)  acoR → transcriptional regulator of acetoin catabolism,PspF‑family
RA AM260480 274,470 (G)10→9 intergenic (+18/‑626) h16_B0246 → / → fhaB Hypothetical protein/filamentous hemagglutinin / adhesin
RA AM260480 293,407 T→A Y759N (TAC→AAC)  flhF → Flagellar GTP‑binding protein
RA AM260480 433,189 A→C R133R (CGA→CGC)  h16_B0381 → Acetyl‑CoA acetyltransferase
RA AM260480 507,425 +A coding (27/564 nt) h16_B0448 → fragment of ABC‑type transport system,periplasmic component: APC family
RA AM260480 635,877 T→C E259E (GAA→GAG)  fliM ← flagellar motor switch protein
RA AM260480 753,133 T→C K37E (AAG→GAG)  h16_B0675 ← Acyl‑CoA dehydrogenase,short‑chain specific
RA AM260480 919,006 T→G C159G (TGC→GGC)  h16_B0812 → hydrolase or acyltransferase (alpha/beta hydrolase superfamily)
RA AM260480 951,073 +G intergenic (‑29/+230) h16_B0838 ← / ← h16_B0839 conserved hypothetical protein/transcriptional regulator, CRP‑family
RA AM260480 963,917 Δ1 bp intergenic (+84/‑3) h16_B0849 → / → h16_B0850 Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific
RA AM260480 978,518 A→G S117G (AGC→GGC)  h16_B0862 → cytosine deaminase or related metal‑dependent hydrolase
RA AM260480 1,166,676 +G intergenic (+150/‑109) h16_B1032 → / → h16_B1033 conserved hypothetical protein/probable extra‑cytoplasmic solute receptor
RA AM260480 1,192,562 +C coding (163/594 nt) cccA → cytochrome c, mono‑or diheme variant
RA AM260480 1,326,746 +G intergenic (+47/‑123) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 1,326,751 +G intergenic (+52/‑118) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 1,326,761 +G intergenic (+62/‑108) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 2,018,102 +C intergenic (+111/+98) h16_B1778 → / ← h16_B1779 putative peptidase/putative peptidase, S33 family
RA AM260480 2,135,859 +C intergenic (‑237/‑97) h16_B1889 ← / → h16_B1890 transcriptional regulator, IclR‑family/APC transporter, AAT family
RA AM260480 2,295,879 T→A Q603L (CAG→CTG)  h16_B2042 ← Hypothetical protein
RA AM260480 2,308,233 (C)5→4 intergenic (+176/‑161) h16_B2050 → / → h16_B2051 response regulator containing a GGDEF effector domain/conserved hypothetical protein
RA AM260480 2,431,093 Δ1 bp coding (2380/2469 nt) h16_B2148 → membrane carboxypeptidase
RA AM260480 2,737,499 A→G intergenic (‑216/+28) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,737,505 Δ1 bp intergenic (‑222/+22) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,737,510 T→G intergenic (‑227/+17) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,843,580 +G intergenic (‑1/+68) pip ← / ← h16_B2516 prolyl aminopeptidase/transcriptional regulator, LysR‑family
MC JC AM260480 2,912,452 Δ39 bp intergenic (+243/–) h16_B2579 → / – cold shock protein, DNA‑binding/–
RA AY305378 682 C→A P190T (CCG→ACG)  hoxK → membrane‑bound [NiFe] hydrogenase small subunit
JC JC AY305378 84,810 ISAE1 (+) +8 bp [hoxW] [hoxW]

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 24058 24120 63 3 [1] [2] 4 h16_A0015 conserved hypothetical protein
* * ÷ AM260479 103025 103082 58 7 [2] [2] 3 h16_A0089 transcriptional regulator, MerR‑family
* * ÷ AM260479 156348 156428 81 3 [2] [2] 4 h16_A0142 Enoyl‑CoA hydratase
* * ÷ AM260479 254004 254024 21 9 [0] [0] 8 h16_A0240 Acetyltransferase (GNAT) family
* * ÷ AM260479 254329 254405 77 4 [2] [1] 5 [h16_A0241] [h16_A0241]
* * ÷ AM260479 378864 378896 33 3 [1] [2] 4 h16_A0360/h16_A0361 response regulator with putative antiterminator output/putative fumarylacetoacetat hydroxylase
* * ÷ AM260479 381499 381651 153 3 [1] [2] 3 ftsY signal recognition particle receptor FtsY
* * ÷ AM260479 522662 522684 23 3 [1] [2] 4 ruvB holliday junction resolvasome, helicase subunit RuvB
* * ÷ AM260479 570441 570496 56 3 [1] [2] 3 h16_A0542/h16_A0543 signal transduction histidine kinase/response regulator, OmpR‑family
* * ÷ AM260479 602934 602963 30 3 [2] [2] 3 [sua] [sua]
* * ÷ AM260479 663335 663369 35 3 [2] [1] 3 h16_A0625 outer membrane protein (porin)
* * ÷ AM260479 718137 718175 39 4 [0] [2] 4 h16_A0667 Sodium:sulfate symporter transmembrane region
* * ÷ AM260479 791389 791523 135 3 [2] [2] 4 [h16_A0732] [h16_A0732]
* * ÷ AM260479 805394 805471 78 3 [2] [2] 3 h16_A0741 conserved hypothetical protein
* * ÷ AM260479 1017275 1017321 47 3 [2] [1] 4 h16_A0921 Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit
* * ÷ AM260479 1029798 1029814 17 3 [2] [0] 4 h16_A0934/h16_A0935 conserved hypothetical protein/ABC‑type transporter, periplasmic component
* * ÷ AM260479 1129282 1129350 69 3 [2] [2] 3 h16_A1031 membrane spanning protein, RDD family
* * ÷ AM260479 1228090 1228135 46 4 [2] [1] 3 [h16_A1126] [h16_A1126]
* * ÷ AM260479 1243323 1243407 85 4 [2] [2] 3 h16_A1141 predicted permease, DMT superfamily
* * ÷ AM260479 1294354 1294404 51 3 [2] [0] 5 h16_A1190 Hypothetical protein
* * ÷ AM260479 1319158 1319193 36 8 [2] [2] 3 h16_A1213/suhB conserved hypothetical protein/inositol monophosphatase
* * ÷ AM260479 1381136 1381233 98 4 [0] [2] 3 h16_A1272 conserved hypothetical protein
* * ÷ AM260479 1402329 1402361 33 3 [1] [2] 6 h16_A1291/h16_A1292 Isovaleryl‑CoA dehydrogenase/ATP‑dependent transcriptional regulator,MalT‑family
* * ÷ AM260479 1603730 1603786 57 4 [2] [2] 3 [tRNA‑Leu (TAG)] [tRNA‑Leu (TAG)]
* * ÷ AM260479 1647017 1647067 51 3 [2] [2] 3 [ispZ] [ispZ]
* * ÷ AM260479 1901821 1901857 37 5 [2] [1] 4 h16_A1743 MFS transporter, DHA1 family
* * ÷ AM260479 1953092 1953178 87 4 [2] [1] 3 h16_A1789/h16_A1791 glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation
* * ÷ AM260479 2081643 2081665 23 3 [2] [1] 3 h16_A1915 Predicted Fe‑S protein
* * ÷ AM260479 2109599 2109642 44 3 [1] [2] 4 h16_A1941 Hypothetical protein
* * ÷ AM260479 2253268 2253329 62 4 [2] [2] 4 h16_A2072 predicted permease
* * ÷ AM260479 2426069 2426181 113 4 [2] [2] 4 [lytT] [lytT]
* * ÷ AM260479 2449849 2449922 74 4 [2] [1] 3 h16_A2254 ABC‑type transporter, permease component
* * ÷ AM260479 2463481 2463551 71 3 [2] [2] 3 h16_A2268/h16_A2269 uncharacterized conserved protein/bacterioferritin comigratory protein
* * ÷ AM260479 2546026 2546137 112 6 [2] [2] 4 argAB acetylglutamate kinase and acetyltransferase
* * ÷ AM260479 3032743 3032797 55 3 [2] [2] 3 h16_A2804 conserved hypothetical protein
* * ÷ AM260479 3207463 3207601 139 5 [1] [2] 4 cobU Adenosylcobinamide‑phosphate guanylyltransferase(CobU)
* * ÷ AM260479 3341357 3341405 49 4 [2] [2] 4 h16_A3087 Anthranilate/para‑aminobenzoate synthase component I
* * ÷ AM260479 3360877 3360961 85 3 [2] [2] 4 h16_A3107 4‑Hydroxybenzoate octaprenyltransferase
* * ÷ AM260479 3365809 3365850 42 4 [0] [2] 4 cG ATP‑dependent DNA helicase
* * ÷ AM260479 3462488 3462557 70 3 [1] [0] 3 [h16_A3204] [h16_A3204]
* * ÷ AM260479 3482474 3482514 41 3 [2] [2] 4 h16_A3225/h16_A3226 ABC‑type transporter, ATPase and permease components/Hypothetical protein
* * ÷ AM260479 3548167 3548211 45 4 [2] [2] 4 [ftsI1]–[ftsL] [ftsI1],[ftsL]
* * ÷ AM260479 3554462 3554525 64 3 [1] [2] 4 h16_A3287 Hypothetical protein
* * ÷ AM260479 3597164 3597252 89 3 [2] [2] 3 [h16_A3326] [h16_A3326]
* * ÷ AM260479 3609151 3609205 55 3 [2] [2] 4 h16_A3334 conserved hypothetical protein
* * ÷ AM260479 3671708 3671758 51 3 [1] [2] 3 h16_A3390/h16_A3391 signal transduction histidine kinase/Hypothetical protein related to helicases
* * ÷ AM260479 3722914 3722974 61 3 [2] [1] 3 h16_A3442/lysA2 protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase
* * ÷ AM260479 3857099 3857135 37 3 [0] [0] 8 h16_A3590 C4‑dicarboxylate transport protein
* * ÷ AM260479 3871550 3871604 55 4 [2] [2] 5 [h16_A3603] [h16_A3603]
* * ÷ AM260479 4004514 4004575 62 5 [2] [2] 4 h16_A3710 response regulator, NarL‑family
* * ÷ AM260479 4037868 4037952 85 3 [1] [2] 3 h16_A3734 conserved hypothetical protein
* * ÷ AM260480 81693 81769 77 4 [1] [3] 4 [h16_B0073] [h16_B0073]
* * ÷ AM260480 174687–175127 180000–175130 4–5314 4 [3] [3] 7 rrsD–[rrfD] rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD]
* * ÷ AM260480 193566 193610 45 5 [3] [3] 4 h16_B0168 putative multidrug resistance protein
* * ÷ AM260480 287738 287757 20 4 [0] [2] 4 h16_B0251/flhB1 Lipoprotein/flagellar biosynthesis protein
* * ÷ AM260480 334549 334609 61 4 [3] [3] 5 h16_B0298/h16_B0299 transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase
* * ÷ AM260480 366247 366292 46 4 [2] [3] 4 h16_B0326 transcriptional regulator, LuxR‑family
* * ÷ AM260480 481542 481561 20 7 [0] [3] 5 h16_B0421 aldehyde dehydrogenase, NAD(P)‑dependent
* * ÷ AM260480 496910 496961 52 4 [2] [3] 5 nhaA Na+/H+ antiporter 1
* * ÷ AM260480 571266 571307 42 6 [2] [0] 4 h16_B0507 Hypothetical protein
* * ÷ AM260480 633588 633660 73 4 [3] [2] 4 [fliR]–[fliQ] [fliR],[fliQ]
* * ÷ AM260480 751997 752055 59 4 [2] [3] 6 h16_B0674/h16_B0675 conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific
* * ÷ AM260480 757332 757351 20 4 [2] [1] 4 [h16_B0678] [h16_B0678]
* * ÷ AM260480 867733–869615 872735–869620 6–5003 4 [1] [3] 4 [rrsE]–[rrfE] [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE]
* * ÷ AM260480 1136732 1136756 25 6 [2] [3] 8 h16_B1009 probable bifunctional P‑450:NADPH‑P450 reductase
* * ÷ AM260480 1222279 1222290 12 14 [3] [3] 4 h16_B1080/tyrB2 Hypothetical protein/tyrosine aminotransferase
* * ÷ AM260480 1319222 1319264 43 4 [3] [3] 7 h16_B1167/h16_B1168 Hypothetical protein/conserved hypothetical protein
* * ÷ AM260480 1465486 1465536 51 4 [3] [3] 5 h16_B1311 Hypothetical protein
* * ÷ AM260480 1482269 1482307 39 5 [2] [2] 15 [h16_B1335] [h16_B1335]
* * ÷ AM260480 2163983 2164023 41 5 [2] [2] 5 h16_B1914 Enoyl‑CoA‑hydratase/isomerase
* * ÷ AM260480 2459876 2459902 27 4 [2] [3] 5 h16_B2171 Glycosyltransferase, probably involved in cell wall biogenesis
* * ÷ AM260480 2515843 2515896 54 4 [2] [2] 4 h16_B2217 ABC‑type transporter, permease component
* * ÷ AM260480 2608850 2608883 34 4 [2] [2] 4 [h16_B2307] [h16_B2307]
* * ÷ AM260480 2670716 2670741 26 5 [1] [2] 5 h16_B2357 Hypothetical protein
* * ÷ AM260480 2866428 2866463 36 4 [3] [2] 8 h16_B2539 conserved hypothetical protein
* * ÷ AY305378 85312 85341 30 2 [0] [0] 2 [hoxI] [hoxI]
* * ÷ AY305378 100030 100153 124 2 [1] [0] 2 kfrA1 putative KfrA protein
* * ÷ AY305378 156559 156608 50 2 [0] [1] 2 kfrA2 putative KfrA‑like protein
* * ÷ AY305378 156828 156850 23 3 [1] [1] 3 PHG157 conserved hypothetical protein
* * ÷ AY305378 400660 400675 16 2 [0] [1] 2 PHG379/pemI hypothetical protein/putative PemI‑like protein
* * ÷ AY305378 451816 451868 53 2 [0] [1] 3 cbbLp/– ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 25463516 (0.580)4 (0.160) 3/194 2.3 20.3% coding (306/453 nt) h16_A0241 Uncharacterized protein, possibly involved in aromatic compounds catabolism
?AM260479 = 254653 17 (0.690)coding (324/453 nt) h16_A0241 Uncharacterized protein, possibly involved in aromatic compounds catabolism
* ? AM260479 342083 =5 (0.180)4 (0.160) 4/200 2.0 40.7% coding (214/1548 nt) amtB ammonium transporter
?AM260479 342103 = 7 (0.270)coding (234/1548 nt) amtB ammonium transporter
* ? AM260479 = 51344318 (0.660)4 (0.160) 4/198 2.0 20.7% coding (1092/1131 nt) h16_A0488 conserved hypothetical protein
?AM260479 = 513567 14 (0.550)coding (968/1131 nt) h16_A0488 conserved hypothetical protein
* ? AM260479 = 108076214 (0.510)4 (0.160) 3/196 2.3 22.3% coding (190/369 nt) h16_A0988 Hypothetical protein
?AM260479 = 1080786 15 (0.600)coding (214/369 nt) h16_A0988 Hypothetical protein
* ? AM260479 2609256 =14 (0.510)6 (0.240) 4/198 2.0 28.6% coding (206/852 nt) h16_A2396 protein of unknown function
?AM260479 2609283 = 17 (0.670)coding (233/852 nt) h16_A2396 protein of unknown function
* ? AM260479 = 271232525 (0.910)6 (0.240) 6/196 1.5 20.0% coding (1570/2022 nt) h16_A2497 signal transduction protein
?AM260479 = 2712337 25 (1.000)coding (1582/2022 nt) h16_A2497 signal transduction protein
* ? AM260479 3618302 =20 (0.730)6 (0.240) 4/196 2.0 26.5% intergenic (+7/+418) ubiX1/h16_A3345 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family
?AM260479 3618333 = 15 (0.600)intergenic (+38/+387) ubiX1/h16_A3345 3‑Polyprenyl‑4‑hydroxybenzoate decarboxylase/aldehyde dehydrogenase family
* ? AM260480 1718541 =12 (0.360)3 (0.100) 3/198 2.8 22.1% coding (24/282 nt) h16_B1530 Hypothetical protein
?AM260480 1718591 = 10 (0.330)coding (74/282 nt) h16_B1530 Hypothetical protein
* ? AM260480 1920889 =20 (0.610)5 (0.170) 5/192 2.1 20.0% coding (639/819 nt) h16_B1690 Thioesterase
?AM260480 1920962 = 22 (0.750)coding (712/819 nt) h16_B1690 Thioesterase
* ? AY305378 = 676048 (0.370)4 (0.200) 4/200 1.6 32.7% coding (652/2391 nt) hypF3 HypF3
?AY305378 = 67623 9 (0.450)coding (671/2391 nt) hypF3 HypF3