mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 2,137,053 | 0 | G | . | 33.3% | 38.1 / 17.9 | 18 | coding (720/1146 nt) | catB3 | muconate cyclo‑isomerase |
| * | AM260479 | 2,137,055 | 0 | T | A | 30.0% | 30.8 / 14.4 | 20 | L241Q (CTG→CAG) | catB3 | muconate cyclo‑isomerase |
| * | AM260479 | 3,382,603 | 0 | A | T | 27.8% | 27.3 / 11.1 | 18 | L193Q (CTG→CAG) | purB | adenylosuccinate lyase |
| * | AM260480 | 1,842,557 | 0 | C | G | 27.8% | 28.2 / 12.4 | 18 | R721R (CGG→CGC) | h16_B1632 | conserved hypothetical protein |
| * | AM260479 | 2,137,064 | 0 | T | A | 26.3% | 31.7 / 11.2 | 19 | L244Q (CTG→CAG) | catB3 | muconate cyclo‑isomerase |
| * | AM260479 | 2,137,065 | 1 | . | C | 26.3% | 43.9 / 16.4 | 19 | coding (732/1146 nt) | catB3 | muconate cyclo‑isomerase |
| * | AM260479 | 133,277 | 0 | T | A | 25.0% | 61.2 / 20.5 | 32 | L62Q (CTG→CAG) | h16_A0118 | Conserved protein of unknown function |
| * | AM260480 | 1,198,661 | 0 | G | C | 24.0% | 50.7 / 15.5 | 25 | R120R (CGG→CGC) | dnaE2 | DNA polymerase III alpha subunit |
| * | AM260479 | 696,526 | 0 | T | A | 23.8% | 40.0 / 11.2 | 23 | intergenic (+4/‑125) | h16_A0653/h16_A0654 | conserved hypothetical protein/Hemolysin‑coregulated protein |
| * | AM260479 | 2,244,317 | 0 | C | A | 23.5% | 80.5 / 18.4 | 34 | G326G (GGG→GGT) | smc | chromosome segregation ATPase |
| * | AM260480 | 1,842,550 | 0 | C | G | 22.7% | 47.0 / 11.2 | 22 | A724P (GCG→CCG) | h16_B1632 | conserved hypothetical protein |
| * | AM260480 | 930,400 | 1 | . | G | 22.2% | 38.4 / 11.5 | 18 | coding (739/2706 nt) | h16_B0821 | transcriptional regulator, LuxR‑family |
| * | AM260479 | 2,244,322 | 0 | T | G | 21.6% | 70.8 / 23.1 | 37 | T325P (ACC→CCC) | smc | chromosome segregation ATPase |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 2064164 | 31 (1.130) | 6 (0.240) | 6/194 | 1.5 | 16.0% | coding (515/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 2064306 | 35 (1.410) | coding (657/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 836152 = | 49 (1.790) | 6 (0.230) | 6/202 | 1.6 | 12.2% | coding (21/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 836171 = | 40 (1.550) | coding (2/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 872790 = | 28 (1.020) | 5 (0.200) | 5/196 | 1.7 | 17.3% | coding (366/423 nt) | ihfB | integration host factor beta subunit |
| ? | AM260479 | 872809 = | 22 (0.880) | coding (385/423 nt) | ihfB | integration host factor beta subunit | |||||
| * | ? | AY305378 | 355796 = | 20 (0.930) | 3 (0.160) | 3/190 | 1.8 | 14.4% | intergenic (+125/‑37) | PHG341/PHG342 | hypothetical protein/conserved hypothetical protein |
| ? | AY305378 | 355870 = | 18 (0.940) | coding (38/1086 nt) | PHG342 | conserved hypothetical protein | |||||
| * | ? | AM260479 | 143626 = | 40 (1.460) | 5 (0.200) | 5/200 | 1.8 | 13.5% | coding (1216/1251 nt) | h16_A0130 | predicted integral membrane protein |
| ? | AM260479 | 143658 = | 27 (1.060) | coding (1184/1251 nt) | h16_A0130 | predicted integral membrane protein | |||||
| * | ? | AM260479 | 48246 = | 34 (1.240) | 5 (0.200) | 5/198 | 1.8 | 13.6% | coding (707/933 nt) | h16_A0032 | Prokaryotic protein of unknown function,predicted cytosolic protein |
| ? | AM260479 | 48294 = | 32 (1.260) | coding (659/933 nt) | h16_A0032 | Prokaryotic protein of unknown function,predicted cytosolic protein | |||||
| * | ? | AM260480 | = 2887778 | 37 (1.120) | 6 (0.190) | 6/208 | 2.0 | 14.0% | coding (1513/1683 nt) | h16_B2557 | 3‑(3‑hydroxy‑phenyl) propionate hydroxylase |
| ? | AM260480 | 2887792 = | 38 (1.190) | coding (1527/1683 nt) | h16_B2557 | 3‑(3‑hydroxy‑phenyl) propionate hydroxylase | |||||
| * | ? | AM260479 | 4024124 = | 18 (0.660) | 4 (0.160) | 4/194 | 2.0 | 19.4% | coding (1065/1455 nt) | h16_A3725 | signal transduction histidine kinase |
| ? | AM260479 | 4024274 = | 17 (0.690) | coding (915/1455 nt) | h16_A3725 | signal transduction histidine kinase | |||||
| * | ? | AM260479 | = 3984523 | 25 (0.910) | 4 (0.160) | 4/194 | 2.0 | 14.9% | coding (1860/2433 nt) | ntrY | signal transduction histidine kinase, nitrogen metabolism regulator NtrY |
| ? | AM260479 | = 3984534 | 23 (0.930) | coding (1849/2433 nt) | ntrY | signal transduction histidine kinase, nitrogen metabolism regulator NtrY | |||||
| * | ? | AM260479 | 3186414 = | 34 (1.240) | 4 (0.160) | 4/196 | 2.0 | 12.3% | coding (2382/3327 nt) | h16_A2946 | Acetyl‑CoA carboxylase (Biotin carboxylase and carboxyl transferase domains) |
| ? | AM260479 | 3186433 = | 26 (1.040) | coding (2401/3327 nt) | h16_A2946 | Acetyl‑CoA carboxylase (Biotin carboxylase and carboxyl transferase domains) | |||||