Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AY305378 | 84810 = | 0 (0.000) | 24 (1.110) | 21/214 | 0.2 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
* | ? | AY305378 | = 84817 | 0 (0.000) | 24 (1.130) | 18/212 | 0.2 | 100% | intergenic (+5/‑18) | hoxW/hoxI | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease/HoxI |
? | AY305378 | 93025 = | NA (NA) | noncoding (1/1313 nt) | ISAE1 | repeat region |
GGCAAGAATGGCAGCGCCATCCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AY305378/84927‑84810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTC < AY305378/94337‑94221 GGCAAGAATGGCAGCGCCATCCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTC < 2:1085032/134‑1 GCAAGAATGGCAGCGCCATCCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTC > 1:601459/1‑133 CAGCGCCATCCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGT < 2:704201/134‑1 TACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGT < 2:601459/133‑1 CTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA > 1:263121/1‑132 CTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTA > 2:306584/1‑132 CCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGC > 1:736979/1‑133 CAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAA > 1:930793/1‑134 AAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACA < 2:276457/134‑1 GGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAG < 1:585391/134‑1 CGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAG < 2:457685/134‑1 TAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAG < 1:906782/127‑1 TAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAG > 2:906782/1‑127 GCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTT > 1:368072/1‑134 GCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTT > 2:484033/1‑134 CGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTC > 2:1154416/1‑86 CGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTC < 1:1154416/86‑1 CTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCA < 2:736979/134‑1 TGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAA < 1:586690/85‑1 TGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAA > 2:586690/1‑85 ATCGCGTTCTCCTTCTAACTGATTTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCC < 2:948896/134‑1 CCTTCTAACTGATCTCAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTC > 1:18725/1‑134 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCG > 2:25431/1‑65 CAGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCG < 1:25431/65‑1 GGCAAGAATGGCAGCGCCATCCCGGCCGATATACTCGCCCAAAGGCGCCTCGTAGATCATCGTTGCGATCCTGTCGATTTCCTGCTCTTTCATCGCGTTCTCCTTCTAACTGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AY305378/84927‑84810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTC < AY305378/94337‑94221 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |