| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 24 (1.110) | 21/214 | 0.2 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | = 84817 | 0 (0.000) | 24 (1.130) | 18/212 | 0.2 | 100% | intergenic (+5/‑18) | hoxW/hoxI | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease/HoxI |
| ? | AY305378 | 93025 = | NA (NA) | noncoding (1/1313 nt) | ISAE1 | repeat region | |||||
GGACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT > AY305378/94220‑94464 | ggACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTc < 1:349631/134‑1 (MQ=255) cAAACAGTTTGCTATGCATCGGTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGgat > 2:505873/1‑107 (MQ=255) cAAACAGTTTGCTATGCATCGGTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGgat < 1:505873/107‑1 (MQ=255) aaaCAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGcc > 1:932324/1‑134 (MQ=255) cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc > 1:1005619/1‑132 (MQ=255) cTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGc > 1:726635/1‑132 (MQ=255) ctctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACt < 2:918231/76‑1 (MQ=255) ctctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACt > 1:918231/1‑76 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACt < 1:286307/74‑1 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACt > 2:286307/1‑74 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAgg > 1:772747/1‑134 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTcc < 2:296535/74‑1 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTcc > 1:296535/1‑74 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgacga < 2:733970/130‑1 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgacga > 1:733970/1‑130 (MQ=255) ttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAg < 1:839273/133‑1 (MQ=255) tgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTc > 1:498778/1‑70 (MQ=255) tgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTc < 2:498778/70‑1 (MQ=255) gccTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGgatga > 2:106430/2‑73 (MQ=255) gccTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGgatga < 1:106430/72‑1 (MQ=255) aCCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGAc > 1:586177/1‑78 (MQ=255) aCCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGAc < 2:586177/78‑1 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAcc < 2:772747/134‑1 (MQ=255) aaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCg < 2:726635/134‑1 (MQ=255) cccGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTg < 1:692451/125‑1 (MQ=255) cccGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTg > 2:692451/1‑125 (MQ=255) gCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCccgc < 1:61789/55‑1 (MQ=255) gCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCccgc > 2:61789/1‑55 (MQ=255) cACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTc > 2:1013759/1‑134 (MQ=255) cACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTc > 1:220660/1‑134 (MQ=255) gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTgg < 1:679713/75‑1 (MQ=255) gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTgg > 2:679713/1‑75 (MQ=255) ttCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAg < 1:1013759/134‑1 (MQ=255) cAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAgg < 1:258497/133‑1 (MQ=255) aaGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGt < 2:1005619/134‑1 (MQ=255) | GGACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGT > AY305378/94220‑94464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |