Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATACAATGAGCC  >  BK006934/359350‑359944
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                          
GTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTAGGCTTATAAAATTATAACATGTACTTATTTTTTTTAAA                                                                                                                                                                                                                                                                                                        >  SRR13385771.1032799/1‑300 (MQ=60)
     AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAA                                                                                                                                                                                                                                                                                                   <  SRR13385771.1154434/300‑1 (MQ=60)
       TTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCAAGACTCATGTCATCTCCTTATACTGTATATGATAATATAATGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAA                                                                                                                                                                                                                                                                                                 >  SRR13385771.119632/1‑300 (MQ=60)
                 TTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGAAAAATCTTTCTGGAAAAATTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATATGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAACTGAAAATACTATTGTCC                                                                                                                                                                                                                                                                                      >  SRR13385771.696844/1‑301 (MQ=60)
                                          TGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTT                                                                                                                                                                                                                                                               <  SRR13385771.274849/299‑1 (MQ=60)
                                                               TTCGCTGACTACTTCTCACGACTCATGTCCTCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAACCTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGACAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATA                                                                                                                                                                                                                                                >  SRR13385771.1456997/1‑293 (MQ=60)
                                                                 CGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAAGCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAG                                                                                                                                                                                                                                      <  SRR13385771.413603/301‑1 (MQ=60)
                                                                    TGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGC                                                                                                                                                                                                                                   >  SRR13385771.1336385/1‑301 (MQ=60)
                                                                         ACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCCAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGCCCTTAATTGTACAATTTTTACATTTGCAGGCCAAATTAGAAAAATAATAGCGCTGCT                                                                                                                                                                                                                               >  SRR13385771.1854709/1‑300 (MQ=60)
                                                                                 CGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAACATAATAGCGCTGCTACTCCAACT                                                                                                                                                                                                                      >  SRR13385771.1180442/1‑301 (MQ=60)
                                                                                   ACTCATGTCATCTCCTTATACTGTATATGCTAATATACTGGTGGTGAATGACAGCAACATCTTTCTGGAACACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTCACATGTACTTATTTTTTTTAAAATGACAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCACATTATAAAACTCATAGCGCTGATACTCCAACTAT                                                                                                                                                                                                                    >  SRR13385771.1077791/1‑301 (MQ=60)
                                                                                                   TATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTG                                                                                                                                                                                                    >  SRR13385771.291253/1‑301 (MQ=60)
                                                                                                    ATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGG                                                                                                                                                                                                   >  SRR13385771.1908550/1‑301 (MQ=60)
                                                                                                                                            AATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATT                                                                                                                                                           >  SRR13385771.516838/1‑301 (MQ=60)
                                                                                                                                                     GGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTAC                                                                                                                                                   <  SRR13385771.296405/300‑1 (MQ=60)
                                                                                                                                                                      AAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCA                                                                                                                                  <  SRR13385771.1547528/300‑1 (MQ=60)
                                                                                                                                                                      AAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCA                                                                                                                                                                                              <  SRR13385771.983841/240‑1 (MQ=60)
                                                                                                                                                                        AGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCG                                                                                                                               >  SRR13385771.256401/1‑301 (MQ=60)
                                                                                                                                                                                               AGGCCAGTGGTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGGAAAATGACTGCTTTTTCGTCTTATAAAATTCTAACATGTACTTATTGTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTAGATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCA                                                                                                          <  SRR13385771.987410/300‑1 (MQ=60)
                                                                                                                                                                                                 GCCAGTGTTATGTTGTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCGGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCGGGTCCAGACGCAGTG                                                                                                       <  SRR13385771.1279355/301‑1 (MQ=60)
                                                                                                                                                                                                           TGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTT                                                                                             >  SRR13385771.422923/1‑301 (MQ=60)
                                                                                                                                                                                                                          GACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCTGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTGAATTGTACAAGTGTTACATTTGGAGGCCACATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGTATTCAACCTTCTTACCAGCACCTTCATAGACAGTTACATTTGCTGTACTACTTGGGGTAGTAGCAGCTGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCT                                                                              <  SRR13385771.675991/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                      CGGCTTATAAAATTCTAACATGTACTTATTTTGTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGACAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCA                                  <  SRR13385771.1708486/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                         CTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAAC                                >  SRR13385771.1466877/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                TATTTTTTTTAAAATGAAAATATTATTGTCCTTAATTTTACAATTGTTACATTTCGAGTCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTAGATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATACA         <  SRR13385771.1117692/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                    TTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAGCCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATACAATGA     <  SRR13385771.1668844/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                     TTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATACCATGAGC   >  SRR13385771.1475816/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                      TTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGACCGATACAATGAGCC  >  SRR13385771.611620/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                          
GTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAACCTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATACAATGAGCC  >  BK006934/359350‑359944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑