Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATAC  >  BK006934/359355‑359936
                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                   
AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTTGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTTGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAA                                                                                                                                                                                                                                                                                            >  SRR13385772.493044/1‑300 (MQ=60)
                TACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTA                                                                                                                                                                                                                                                                            <  SRR13385772.5251/300‑1 (MQ=60)
                           TACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTACTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATT                                                                                                                                                                                                                                                                 <  SRR13385772.27088/300‑1 (MQ=60)
                                                   CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATA                                                                                                                                                                                                                                         <  SRR13385772.775672/300‑1 (MQ=60)
                                                   CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTAT                                                                                                                                                                                                                                          <  SRR13385772.1165053/299‑1 (MQ=60)
                                                                    ACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTATGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCT                                                                                                                                                                                                                        >  SRR13385772.503149/1‑300 (MQ=60)
                                                                          CACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTTAATGTCAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTC                                                                                                                                                                                                                    <  SRR13385772.457380/298‑1 (MQ=60)
                                                                                              TATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCATTGTTATGTTGTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTGTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAAGAGCGCTGCTACTCCAACTATATAACCCATGTTCT                                                                                                                                                                                               <  SRR13385772.806389/299‑1 (MQ=60)
                                                                                                                                      AAATCTTTCTGTAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACAT                                                                                                                                                    <  SRR13385772.545/301‑1 (MQ=60)
                                                                                                                                                     ACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTG                                                                                                                                     <  SRR13385772.224407/301‑1 (MQ=60)
                                                                                                                                                          TTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGCCTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGT                                                                                                                                 >  SRR13385772.1064829/1‑300 (MQ=60)
                                                                                                                                                             TCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGT                                                                                                                              <  SRR13385772.2723/300‑1 (MQ=60)
                                                                                                                                                                  AAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTGTTCGGCTTAGAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGC                                                                                                                        <  SRR13385772.1051188/301‑1 (MQ=60)
                                                                                                                                                                     AAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATACAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTCCTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCCGCACCTTCATAGACAGAGACATTTGCGGTACTCCTTGGGGTAGTAGCCGCGGG                                                                                                                     >  SRR13385772.511779/1‑301 (MQ=60)
                                                                                                                                                                               TTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGG                                                                                                            >  SRR13385772.1040076/1‑301 (MQ=60)
                                                                                                                                                                                   AATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCC                                                                                                         <  SRR13385772.649265/300‑1 (MQ=60)
                                                                                                                                                                                                       GTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTG                                                                                    >  SRR13385772.446222/1‑301 (MQ=60)
                                                                                                                                                                                                                AATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTACAGACGCCGTGGCTTGGATTTGACCATCAAT                                                                           >  SRR13385772.906211/1‑301 (MQ=60)
                                                                                                                                                                                                                                           ACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTG                                                                          <  SRR13385772.516223/275‑1 (MQ=60)
                                                                                                                                                                                                                                                                    CTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAAC                        >  SRR13385772.321913/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                    CTTATAAAATTCTAACATGAACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTCGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACC                       >  SRR13385772.1116744/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                      TATAAAAGTCTAACATGTACTTATGTTGGTTAAAAGTAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTTGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATAGAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGTACCTTCAGAGACAGAGACATTTGCGGTACTACTTGGGGTATTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACA                       <  SRR13385772.1059904/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                                         CTTATTTTTTTTAAACTGAAAATCCTATTGTCCTTAATTGTACAATTTTTACATTTGGCGGCCACATTCTAACAATAATAGAGCTGCTACTCCAACTATATAACCCCTGTTCTTGGA‑TCACCACTTCATACCAGCACCTTCATAGCCCGAGACATTTGCGGTACTACTCGGGGTAGTAGCAGCGCTAGTATCAGGTCCAGACGCCGTGGCTTGGATTTGACCATCACTGATCTGTGAACTAGCGGCACCTTGCTTTTTGCCGGGTTGCTGATCTGCACCAGCGCTTCTATTGGAACGATAC  >  SRR13385772.898317/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                           TATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGTAGGCCAGATTATAAAAATAATAGCGCTGCTACTCCAACTATATATCCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATAC  <  SRR13385772.63751/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                   
AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATAC  >  BK006934/359355‑359936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑