Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCAAACTGCTGAGATTGAGTTTGCGCTTGAGGCTGAGATGGAGGTTGGCCTGTTGCACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCATTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCATAATCGGGACACTCTTCAAAGGAAAGACTTCTGACGATTTCTAGATACCTGCCAAATTGCACAGGTAAGCCTT  >  BK006934/372820‑373400
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                             
GCCAAACTGCTGAGATTGAGTTTGCGCTTGAGGCTGAGATGGAGGTTGGCCTGTTGCACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGCAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATCTCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGG                                                                                                                                                                                                                                                                                          >  SRR13385771.867144/1‑301 (MQ=60)
                     TTGCGCTTGAGGCTGAGATGGAGGTTGGCCTGTTGCACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTG                                                                                                                                                                                                                                                                      <  SRR13385771.1055438/300‑1 (MQ=60)
                              GGGCTGAGATGGAGGTTGGTCTGTTGGACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGTGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTA                                                                                                                                                                                                                                                            <  SRR13385771.226329/301‑1 (MQ=60)
                                                GCCTGTTGCACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCG                                                                                                                                                                                                                                          <  SRR13385771.1899645/301‑1 (MQ=60)
                                                          CGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCGTATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGAT                                                                                                                                                                                                                                >  SRR13385771.218282/1‑301 (MQ=60)
                                                                        TTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTAT                                                                                                                                                                                                                  >  SRR13385771.869246/1‑301 (MQ=60)
                                                                                GCTGCTGTTGAAATTGTTGTGATTGAGGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTATAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGGTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGA                                                                                                                                                                                                           <  SRR13385771.1207077/300‑1 (MQ=60)
                                                                                            ATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTT                                                                                                                                                                                              <  SRR13385771.306964/301‑1 (MQ=60)
                                                                                                       TGAAGTTGTTGCTCCTGAAGTTTTTGTTGATGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGT                                                                                                                                                                                      <  SRR13385771.742640/298‑1 (MQ=60)
                                                                                                                         ggtgTTTGTTGCTTCTGTGTCTGTTGTTGTTCTTGTAGGTATTTCTGCTGGGTTGGATGCTGGTAAGCTGCATAAGAAGTAGTGTCTAACTGTGGTTTATATTGAGAATTGCGCAGAGCTGCCTCATTTTTGTTAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGGGCTGTTGCATTTTGAGCTGTTTGTTTCTATGTTTTCGCGATTGTTCGTTTGGTGGATTTGGATGTCCGTATCCGTGGAGATTTGGCTTCTTGGTTATGTTAAGGTCCCTACCACGGCCAT                                                                                                                                                                 <  SRR13385771.887106/297‑1 (MQ=60)
                                                                                                                         AGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCAT                                                                                                                                                                 >  SRR13385771.181414/1‑301 (MQ=60)
                                                                                                                                   GCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTT                                                                                                                                                       <  SRR13385771.1349774/301‑1 (MQ=60)
                                                                                                                                     TGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTC                                                                                                                                                      >  SRR13385771.81207/1‑300 (MQ=60)
                                                                                                                                                  GTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCCGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGCTTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTG                                                                                                                                        >  SRR13385771.336038/1‑301 (MQ=60)
                                                                                                                                                  GTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTG                                                                                                                                        <  SRR13385771.569771/301‑1 (MQ=60)
                                                                                                                                                   TTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTCTGTTTTCTCGATTTTTCGTTTGGTGGATTTGGCTGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGG                                                                                                                                       >  SRR13385771.1550693/1‑301 (MQ=60)
                                                                                                                                                                            GTTTGATGCTTGTTAGCTTCATAAGTAGGAGGGTCTAACTGTGGTTTATATTGAGAAGTGCGCGTATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGTGTCTGTTGCTGTTGGAGCTGTTGCATTTGGATCTGTGTGTTTCGATGTTTTCTCGATTTTTCGGTGTGTGGATTTGGAGGGCCGTATCCGTGGAGATTTGGCTTCTTTTTTATGTTAAGATCCCAACCACGGCCATCTTTCAGTTGCATCCAAGCATATTGTCCGTCCGCGGTTTCACCTAAATCAT                                                                                                              <  SRR13385771.1083842/301‑1 (MQ=60)
                                                                                                                                                                                         AAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGATGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAG                                                                                                 <  SRR13385771.609336/301‑1 (MQ=60)
                                                                                                                                                                                                                AACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCA                                                                                                                                                                            >  SRR13385771.527324/1‑203 (MQ=60)
                                                                                                                                                                                                                 ACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTCTGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATCTTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCAT                                                                          >  SRR13385771.947064/1‑300 (MQ=60)
                                                                                                                                                                                                                  CTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGT                                                                                                                            <  SRR13385771.934705/249‑1 (MQ=60)
                                                                                                                                                                                                                    TTGGTTTATATTGTGTATTGCGCATTTCTGCCTCAGTTTTTTGGGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCAGTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCATA                                                                         <  SRR13385771.14219/298‑1 (MQ=60)
                                                                                                                                                                                                                                                          TTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCATAATCGGGACACTCTTCAAAGGAAAGACTTCTGACGATTTAT                                 >  SRR13385771.1864722/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                            TGCTGTTGCTGTTGTTGGTGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTCAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCATAATCGGGACACTCTTCAAAGGAAAGACTTCTGACGATTTCTAGATACCTGCCAAATTGC               <  SRR13385771.581301/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                        TGTTGGAGCTGTTGCTGTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATCGCCTTCATAATCGGGACACTATTCAAAGGAAAGACTTATGACGATTTCTAGATACCTGCCAAATTGCACAGGTAAGCATT  >  SRR13385771.1455221/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                             
GCCAAACTGCTGAGATTGAGTTTGCGCTTGAGGCTGAGATGGAGGTTGGCCTGTTGCACGTAGCTGTTGCTGTTGCTGTTGCTGCTGTTGCAATTGTTGCTCTTGAAGTTGTTGCTCCTGAAGTTTTTGTTGCTGCTGTCTCTTTTGTTGTTCTTGCAGGTATTTCTGCTGGGTTTGATGCTGGTAAGCTTCATAAGAAGTAGGGTCTAACTTTGGTTTATATTGAGAATTGCGCATATCTGCCTCAGTTTTTTGAGCATATTGCTGTTGCTGTTGCTGTTGTTGGAGCTGTTGCATTTGGAGCTGTTGCATTTGGAGCTGTTTGTTTCTATGTTTTCTCGATTTTTCGTTTGGTGGATTTGGATGGCCGTATCCGTGGAGATTTGGCTTCTTGTTTATGTTAAGATCCCAACCACGGCCATCGTTCAGTTTCATCCAATCATATTGGCCGTCCGCGGTTTCACCTAAATCATCCAGTACAGATAGTAATAGTTTTCTATAGCCTTCATAATCGGGACACTCTTCAAAGGAAAGACTTCTGACGATTTCTAGATACCTGCCAAATTGCACAGGTAAGCCTT  >  BK006934/372820‑373400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑