Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCAAATAAATCTTCCAAAGAGGGACCCAAAAGATCAATGACCAAGATATTGTGCAAACCTTCTTGGCCGAAGTAGTACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTGTTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTTTGCGTTTGTTGTTTGTAAGAAGC  >  BK006934/373849‑374446
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                         
ATCAAATAAATATTCCAAAGAGGGACCCAACAGATCACTGACCCAGATATTGTGCAAACCTTCTTGGCCGAAGTAGTACGCGTAGGGGCTATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATAGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTT                                                                                                                                                                                                                                                                                                           >  SRR13385772.348387/1‑301 (MQ=60)
       AAATCTGCCAAAGAGGGGTCCAAAAGATCAATGACCACGGAAGTGTGCAAACCTGCTTGGCGGAAGTAGATGTCGTAGGGGATATTGGGGGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCGTAAGTGGGGGGCCTTCGTTGTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTATGGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGT                                                                                                                                                                                                                                                                                                    <  SRR13385772.945465/301‑1 (MQ=60)
        agtcaTCCAAAGAGGGACCCAAAAGATCAATGACCAAGATATTGTGCAAACCTTCTTGGCCGAAGTAGTACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTAACTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTT                                                                                                                                                                                                                                                                                                   <  SRR13385772.786719/296‑1 (MQ=60)
                                                ATTGTGCAAACCTTCTTGGCCGAAGTAGTACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCG                                                                                                                                                                                                                                                             >  SRR13385772.1032784/1‑299 (MQ=60)
                                                         ACCTTCTTGGCCGAAGTAGTACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCC                                                                                                                                                                                                                                                  >  SRR13385772.1113148/1‑301 (MQ=60)
                                                                             GCGCGTAGGGGATATTGGGAGTGCCATTCAGAATTGTATATGGTTTATATTCATCTCTGAATTGAGGGGCCGCCGTTTGTCTGGGCTCGCATTTGATCGCTACGGGTACGCCATTGATCATATTAGTACCTTCTAATAGCACTCCAAAGGAACCTTCCCCTATGTGTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGTCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTT                                                                                                                                                                                                                              <  SRR13385772.608262/301‑1 (MQ=60)
                                                                             ACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGCCGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACACTAGTAGAGTCATCTCTGGACGCGTTGCTATTGGCGTTGGCGGCGGTCGTGGCGGTCATCGACGACCTTCCGGGCGAGTCGACCGCCTGGCGGTGGCGTTGTTTGTT                                                                                                                                                                                                                              >  SRR13385772.1281824/1‑301 (MQ=60)
                                                                                              GGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCGCTTATTTGAGGGGCGTACGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTATTACCTTCAATTAGCAGACCAAAGGAACCTTCCCCTATTTGTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGTAGTTGTTTGTTTGCTTGTACGTTAAAAT                                                                                                                                                                                                             <  SRR13385772.1017272/301‑1 (MQ=60)
                                                                                                AGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTT                                                                                                                                                                                                           <  SRR13385772.648317/301‑1 (MQ=60)
                                                                                                           GAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTCCGTTAACATTTGCGTTTCCGTT                                                                                                                                                                                                >  SRR13385772.511851/1‑301 (MQ=60)
                                                                                                             ATTTTATATGTTTTATATTCATCTCTTAATTGAGGGTCCTCCTTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTA                                                                                                                                                                                              <  SRR13385772.740603/301‑1 (MQ=60)
                                                                                                                            TATTCATCTGTTCATTGAGGGGCCTCCGTTTTTCTGGGCTCGCATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCACTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTG                                                                                                                                                                                <  SRR13385772.508534/300‑1 (MQ=60)
                                                                                                                                CATCTCTTAATTGAGGGGCCTCCGTTTTTGTGGGCTCTAATTTGATCGCGACGGGTAAGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAA                                                                                                                                                                            <  SRR13385772.792563/300‑1 (MQ=60)
                                                                                                                                                    TCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTTAGGTTGTTAACTGCTAGAGTGGTACTTGCTT                                                                                                                                                       >  SRR13385772.463998/1‑301 (MQ=60)
                                                                                                                                                     CCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCT                                                                                                                                                        <  SRR13385772.1296384/299‑1 (MQ=60)
                                                                                                                                                                                              TTGATCATATTAGTACCTTCAAATAGCACACCCAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGCTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGGGAGCAGGCAAAGGGCC                                                                                                               >  SRR13385772.1000220/1‑299 (MQ=60)
                                                                                                                                                                                                                   AATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATCGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGATGGCGGCGGTCGTGGCGGTCATCGAAGATATTGCGGGCGAGTCGACAGCCTGGAGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTACGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGACAGCGAATGCGCGAAATTTTTGT                                                                                         >  SRR13385772.941868/1‑300 (MQ=60)
                                                                                                                                                                                                                                                              TGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGGTCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGT                                                <  SRR13385772.941964/298‑1 (MQ=60)
                                                                                                                                                                                                                                                                 AATGTAGGCCGGCAAGAGTAGGGTCATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCG                                                                                                                                                                                                                                                                                   <  SRR13385772.1011229/68‑1 (MQ=60)
                                                                                                                                                                                                                                                                             aaaggGTAGAGTCATCTCTGGAAGAGTGGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGATTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTGTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTGCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAA                              <  SRR13385772.1113990/296‑1 (MQ=60)
                                                                                                                                                                                                                                                                                  gtggaggcggCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTT                         <  SRR13385772.37865/291‑1 (MQ=60)
                                                                                                                                                                                                                                                                                    AGAGTCATCTCTGGAAGAGTTGCTATGGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGATTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACTTGAAAACCAGTCACAGAGCACTCAATGAACGGTTTG                       >  SRR13385772.699042/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                         CATCTCTGGAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTTTGCGTTT                  >  SRR13385772.1071801/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                 GAAGAGTTGCTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTTTGCGTTTGTTGTTTG          <  SRR13385772.1297514/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          CTATTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTTTGCGTTTGTTGTTTGTAAGAAGC  >  SRR13385772.535573/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                         
ATCAAATAAATCTTCCAAAGAGGGACCCAAAAGATCAATGACCAAGATATTGTGCAAACCTTCTTGGCCGAAGTAGTACGCGTAGGGGATATTGGGAGTGCCATTCAGAATTTTATATGTTTTATATTCATCTCTTAATTGAGGGGCCTCCGTTTTTCTGGGCTCGAATTTGATCGCGACGGGTACGCCATTGATCATATTAGTACCTTCAAATAGCACACCAAAGGAACCTTCCCCTATTTTTTTGCCGATCTTGTAATGTAGGCCGACAATAGTAGAGTCATCTCTGGAAGAGTTGCTGTTGGAGTTGGCGGCGGTCGTGGCGGTCATCGAAGATCTTGCGGGCGAGTCGACAGCCTGGTGGTGGAGTTGTTTGTTTGCTTGTACGTTAAAATTTGCGTTTCCGTTTATATTGGTGAGGTTGTTAACTGCTAGAGTGGTACTTGCTATGGGCATGGACATGGGGAAGAGGAGAGCAGGAAAAGGGCCAGCGAATGCGCGAAATTTTTGTATGTGTCTTTTCTCTACTATGGCATCCACATGAAAACCAGTCACAGAGCACTCAATGAACGGTTTGCGTTTGTTGTTTGTAAGAAGC  >  BK006934/373849‑374446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑