Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAA  >  BK006934/374811‑375409
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           
TTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCAC                                                                                                                                                                                                                                                                                                             >  SRR13385771.939033/1‑300 (MQ=60)
    AAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAA                                                                                                                                                                                                                                                                                                        <  SRR13385771.1405337/301‑1 (MQ=60)
    AAGTTGATCCACTGAGAGATTGTGACTGAGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACAATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTA                                                                                                                                                                                                                                                                                                         >  SRR13385771.1448276/1‑300 (MQ=60)
                          TGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGTCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGC                                                                                                                                                                                                                                                                                   >  SRR13385771.757109/1‑300 (MQ=60)
                          TGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGC                                                                                                                                                                                                                                                                                   >  SRR13385771.1427344/1‑300 (MQ=60)
                                                                   TGAGCCTCCTGCACTCGTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAG                                                                                                                                                                                                                                          <  SRR13385771.231775/300‑1 (MQ=60)
                                                                                  CTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATTCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTTAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAAGACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGG                                                                                                                                                                                                                            <  SRR13385771.1541546/299‑1 (MQ=60)
                                                                                                       CGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTT                                                                                                                                                                                                      >  SRR13385771.84126/1‑300 (MQ=60)
                                                                                                                CGGAGAGTTTTCTTCCCTTATGCTGGTGCCCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATATAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACCGTC                                                                                                                                                                                             >  SRR13385771.1443826/1‑300 (MQ=60)
                                                                                                                 GGATAGTTTTCTTGCCTTATGCTGGTGATCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAGCTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAGCGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCA                                                                                                                                                                                            <  SRR13385771.1389269/300‑1 (MQ=60)
                                                                                                                                        GGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCCATTTGCCCCTGGCTCTCTGTAACTACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTG                                                                                                                                                                    <  SRR13385771.150447/301‑1 (MQ=60)
                                                                                                                                                                         GTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGTAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTT                                                                                                                                   >  SRR13385771.682047/1‑301 (MQ=60)
                                                                                                                                                                                    GTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTA                                                                                                                         <  SRR13385771.292436/300‑1 (MQ=60)
                                                                                                                                                                                          ATTTTGCCGCGTGGCGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCCAAGT                                                                                                                                                                                        >  SRR13385771.74147/1‑231 (MQ=60)
                                                                                                                                                                                                     TGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTACATCAGGCCGCTCCGTTTGGAACTTTACGGCGTTGTAGTTGTAAT                                                                                                       >  SRR13385771.27494/1‑301 (MQ=60)
                                                                                                                                                                                                                  CCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTTCGCATGGGACGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGAGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTACGTTACAACAGACAAAGTAATGAACTTTCGCACACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACCGCGTTGTCGTTGTAATTGCTATAAGTGCC                                                                                          >  SRR13385771.544000/1‑301 (MQ=60)
                                                                                                                                                                                                                         GCCCCTTGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCTTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCTCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTAGTTGTAATTGCTATAAGTGCCATGCAT                                                                                    <  SRR13385771.456079/300‑1 (MQ=60)
                                                                                                                                                                                                                          CCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATTTATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTT                                                                                  <  SRR13385771.1115324/301‑1 (MQ=60)
                                                                                                                                                                                                                                                           GTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGG                                                 >  SRR13385771.576992/1‑301 (MQ=60)
                                                                                                                                                                                                                                                              ATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTT                                               >  SRR13385771.591303/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                             TAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTT                               >  SRR13385771.1521135/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                 TGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGATAGAAGTTGA            >  SRR13385771.442851/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                           CAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTCGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGATGAAGAGGAGAGA  >  SRR13385771.1433237/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           
TTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAA  >  BK006934/374811‑375409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑