Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCG  >  BK006934/374890‑375453
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                          
CCTCTTTGCGCCTCAAGAGAGGAGCTATCTCCTCGGAGAGTTTTCTTCCCTGATGCTGGTTACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGTAACTGCTGTTTCCATTGTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATG                                                                                                                                                                                                                                                                          <  SRR13385772.547914/301‑1 (MQ=60)
                            CTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGACCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAAC                                                                                                                                                                                                                                              >  SRR13385772.753868/1‑301 (MQ=60)
                                 CGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCAAGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTC                                                                                                                                                                                                                                          >  SRR13385772.994140/1‑300 (MQ=60)
                                   GAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTACTAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAA                                                                                                                                                                                                                                        >  SRR13385772.997890/1‑300 (MQ=60)
                                                                                   TGGCCTTTTGAAACTGCTGTTTCCATTTTGCCGCGTGTAGACATCTTTCCAATTTGCCCCTGGCTTTCTGTAAATACCCATATATTAACGTTATATATATTGTATATTAATGTCGTATATGTGCGCATGTGAAGTCACAGTAATAGATCTAGGCACGTGTCTGCAGTGACTCCGCTCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACTGTATGTTACAACAGTCAAATTAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCC                                                                                                                                                                                        <  SRR13385772.994019/300‑1 (MQ=60)
                                                                                                                  CGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTG                                                                                                                                                        <  SRR13385772.421757/301‑1 (MQ=60)
                                                                                                                           ACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTA                                                                                                                                               <  SRR13385772.197287/301‑1 (MQ=60)
                                                                                                                                          GCCGCTGGCTCTCTGTAAATACCCGTATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAATGTAGATAAGAGAGCGGAGCACATGGTAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATT                                                                                                                                <  SRR13385772.1207036/301‑1 (MQ=60)
                                                                                                                                               TGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGCACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGT                                                                                                                           >  SRR13385772.132393/1‑301 (MQ=60)
                                                                                                                                                   TCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATAT                                                                                                                       >  SRR13385772.902930/1‑301 (MQ=60)
                                                                                                                                                          AAATACCCATATATGAACGTTATATATATTGTATATTACTGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGCTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTT                                                                                                                >  SRR13385772.1144253/1‑301 (MQ=60)
                                                                                                                                                                 CATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGTCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGT                                                                                                         >  SRR13385772.425660/1‑301 (MQ=60)
                                                                                                                                                                 CATATATGAACGTTATAGATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGG                                                                                                         >  SRR13385772.173869/1‑301 (MQ=60)
                                                                                                                                                                       TGAACGTTATATATATTGTATATTAATTGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCTGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGA                                                                                                    <  SRR13385772.740654/300‑1 (MQ=60)
                                                                                                                                                                        GAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTAC                                                                                                           >  SRR13385772.160479/1‑292 (MQ=60)
                                                                                                                                                                            GTTTTATATATTGTGTATTAATTGCGTATATGTGCGCAGGGGAAGTCACAGTAAGAGATCTAGGCACGTGGCTGCATTGACTCCGCGCATTGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCTCCCACGTGCTTACATCATTTACTATCTCAGGCCGCTTCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCATGCATTTATGTATATATATTTTCGGACGTAATGAACATGG                                                                                              <  SRR13385772.440090/301‑1 (MQ=60)
                                                                                                                                                                                      TTTTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACTGTATGTTACAACAGTCAAAGTAATGAACGTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTATTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTAT                                                                                     <  SRR13385772.510247/300‑1 (MQ=60)
                                                                                                                                                                                       TGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATAT                                                                                   >  SRR13385772.1254883/1‑301 (MQ=60)
                                                                                                                                                                                                            TGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTAGTAATTGCTATAAGTGCCATGAATTTATGTAAATATATTATCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGA                                                               >  SRR13385772.493370/1‑300 (MQ=60)
                                                                                                                                                                                                                             AGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGATGAG‑AAAA                                             >  SRR13385772.504437/1‑300 (MQ=60)
                                                                                                                                                                                                                              GTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAA                                           <  SRR13385772.224259/301‑1 (MQ=60)
                                                                                                                                                                                                                                     gtctaggctgttggctggagtggctgcggGCAGGGCTGTACCGCGAAGGTAGGTAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAGGTAATGAAGTTGCGCGCACGTGCTGACATCAGTTACTATCTCAGGGCGCTGGGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCAGGGATTGATGTATATATATTTTCTTACGGAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAag                                    <  SRR13385772.857212/272‑3 (MQ=60)
                                                                                                                                                                                                                                         AGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAGA                                    <  SRR13385772.427661/297‑1 (MQ=60)
                                                                                                                                                                                                                                                        GGGACGCCGCGCAGGGCTGTACCTCCAAGGTGGATAAGAGAGCGGAGCACATGGGAAAATAGATATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCTTTGTAGTTGTAATTGCGATAAGGGCCATGCATTTATGTATATATGTTTTCTTACGTAATGAACATTGTGATTTTATATATTGTTTGCAATCAGAGAGAAGTGGAAGAGGAGAAAAAAAAAAAAGAGAGAGCCGTACCGCAATA                  <  SRR13385772.775830/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                        GTGTACCGCCAAGGTAGATGAGAGAGCGTAGGACATGGGAAAAGGGAGAGACGGTATGTTACATCAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACAACAATTGCTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTGGTTGTAATTACTATAAGTGCCATGCATTTATGTATATATAATGTAGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGGGGAAAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCG  <  SRR13385772.45694/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                          
ACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCG  >  BK006934/374890‑375453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑