Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGA‑G‑AAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTG  >  BK006934/374893‑375461
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                   
CTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATTCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTTAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAAGACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGG                                                                                                                                                                                                                                                                                  <  SRR13385771.1541546/299‑1 (MQ=60)
                     CGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTT                                                                                                                                                                                                                                                            >  SRR13385771.84126/1‑300 (MQ=60)
                              CGGAGAGTTTTCTTCCCTTATGCTGGTGCCCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATATAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACCGTC                                                                                                                                                                                                                                                   >  SRR13385771.1443826/1‑300 (MQ=60)
                               GGATAGTTTTCTTGCCTTATGCTGGTGATCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAGCTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAGCGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCA                                                                                                                                                                                                                                                  <  SRR13385771.1389269/300‑1 (MQ=60)
                                                      GGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCCATTTGCCCCTGGCTCTCTGTAACTACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTG                                                                                                                                                                                                                          <  SRR13385771.150447/301‑1 (MQ=60)
                                                                                       GTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGTAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTT                                                                                                                                                                                         >  SRR13385771.682047/1‑301 (MQ=60)
                                                                                                  GTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCGAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTA                                                                                                                                                                               <  SRR13385771.292436/300‑1 (MQ=60)
                                                                                                        ATTTTGCCGCGTGGCGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCCAAGT                                                                                                                                                                                                                                              >  SRR13385771.74147/1‑231 (MQ=60)
                                                                                                                   TGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTACATCAGGCCGCTCCGTTTGGAACTTTACGGCGTTGTAGTTGTAAT                                                                                                                                                             >  SRR13385771.27494/1‑301 (MQ=60)
                                                                                                                                CCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTTCGCATGGGACGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGAGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTACGTTACAACAGACAAAGTAATGAACTTTCGCACACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACCGCGTTGTCGTTGTAATTGCTATAAGTGCC                                                                                                                                                >  SRR13385771.544000/1‑301 (MQ=60)
                                                                                                                                       GCCCCTTGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCTTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCTCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTAGTTGTAATTGCTATAAGTGCCATGCAT                                                                                                                                          <  SRR13385771.456079/300‑1 (MQ=60)
                                                                                                                                        CCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATTTATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTT                                                                                                                                        <  SRR13385771.1115324/301‑1 (MQ=60)
                                                                                                                                                                         GTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGG                                                                                                       >  SRR13385771.576992/1‑301 (MQ=60)
                                                                                                                                                                            ATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTT                                                                                                     >  SRR13385771.591303/1‑300 (MQ=60)
                                                                                                                                                                                           TAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTT                                                                                     >  SRR13385771.1521135/1‑301 (MQ=60)
                                                                                                                                                                                                               TGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGATAGAAGTTGA                                                                  >  SRR13385771.442851/1‑300 (MQ=60)
                                                                                                                                                                                                                         CAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTCGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGATGAAGAGGA‑G‑AGA                                                      >  SRR13385771.1433237/1‑300 (MQ=60)
                                                                                                                                                                                                                                           GGTGGCGGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGGGCGGAGCACATGGGAAAAGAGAGATACGGTATTTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGA‑GAAAAAAAAAAAAGAGAGAGCCG                                    <  SRR13385771.983199/301‑1 (MQ=60)
                                                                                                                                                                                                                                                          TCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGA‑GAAAAAAAAAAAAGAGAGAGACGTACCGCAATAAAAT                      >  SRR13385771.1900719/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                             CCAAGGTAGAGAAGAAAGCGGAGCACATGGGAAAGGAAAGATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCCCCCACGTTCTTACATCATTTACTATCTCAGGCCGCTGCTTTTGGAACTTTTCGGCGTGGTAGTTGTAATTGCTATAAGTGCCATGCATGTATGTATATATATTTTCGTACGTAATGAACATGTTTATGTTATATATTTTTTGCAATCAGAGAGAAGTTGAAGAGTATA‑AAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTG  <  SRR13385771.170070/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                   
CTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGA‑G‑AAAAAAAAAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTG  >  BK006934/374893‑375461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑