Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
6081 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑AAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTAT > BK006934/375021‑375603
|
CCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTTCGCATGGGACGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGAGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTACGTTACAACAGACAAAGTAATGAACTTTCGCACACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACCGCGTTGTCGTTGTAATTGCTATAAGTGCC > SRR13385771.544000/1‑301 (MQ=60)
GCCCCTTGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCTTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCTCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGTCGTTGTAGTTGTAATTGCTATAAGTGCCATGCAT < SRR13385771.456079/300‑1 (MQ=60)
CCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATTTATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTT < SRR13385771.1115324/301‑1 (MQ=60)
GTTATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGG > SRR13385771.576992/1‑301 (MQ=60)
ATATATATTGTATATTAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTT > SRR13385771.591303/1‑300 (MQ=60)
TAATGGCGTATATGTGCGCATGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTT > SRR13385771.1521135/1‑301 (MQ=60)
TGGGAAGTCACAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGATAGAAGTTGA > SRR13385771.442851/1‑300 (MQ=60)
CAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTCGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGATGAAGAGG‑A‑G‑AGA > SRR13385771.1433237/1‑300 (MQ=60)
GGTGGCGGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGGGCGGAGCACATGGGAAAAGAGAGATACGGTATTTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCG < SRR13385771.983199/301‑1 (MQ=60)
TCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGACGTACCGCAATAAAAT > SRR13385771.1900719/1‑300 (MQ=60)
CCAAGGTAGAGAAGAAAGCGGAGCACATGGGAAAGGAAAGATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCCCCCACGTTCTTACATCATTTACTATCTCAGGCCGCTGCTTTTGGAACTTTTCGGCGTGGTAGTTGTAATTGCTATAAGTGCCATGCATGTATGTATATATATTTTCGTACGTAATGAACATGTTTATGTTATATATTTTTTGCAATCAGAGAGAAGTTGAAGAGT‑ATA‑AAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTG < SRR13385771.170070/301‑1 (MQ=60)
aaagtaaataaggaagggacgaacagGGGAAAAGAGACATACGGTATGTTACAACATGCAAAGTAATGCACTTTCGCCCACGGGCGTACATCATTTACTTATTCAGGGCGCTGCGTTTGGGTCTTTGCGGCTTTGTAGTTTGAATTGCTATAAGGGCCATGCATTTATGTATTTATTTTTTCGTACGAAATGAACCTGGTTATGTTATATATTGTTTGAAATCAGAAGGAAGTTGAAAAGGAA‑A‑AAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAG < SRR13385771.502131/275‑1 (MQ=60)
TGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGACACGTGcgaacaaatactatcgccccccccacc > SRR13385771.787132/1‑274 (MQ=60)
AAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGACGTACCGCAATAAAATGGACACTTGTaggaacagtgagccaaaatacaattgcagacacagacaca > SRR13385771.292311/1‑260 (MQ=60)
aaatgCAAAGAAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACAGGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAA < SRR13385771.1622210/293‑1 (MQ=60)
ACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTTTCGGTCACGTGAGCAACAATACTATTGCCGCAGACGGCACAAGATAAAAACAAAGGAATAAAAAC > SRR13385771.623589/1‑300 (MQ=60)
TCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTCGTTGTAATTGCTATAAGTGCCATGCAATTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑AAAAAAACAAAAGAAAGAGCCGTACCGCAATAAAATGGACCCTTttaggtccccctacccaaaacaatcttacctccaaacgccctcacaaataacaaacgactacacacaaaa > SRR13385771.211701/1‑230 (MQ=60)
GAACTTTCGCCCACGTGCGTACATCATTTACTATGTCAGGCCGCTGCGTTTGGAAATTTACGGGTTTGTAGTTGTAATTGCTATAAGTGCCAGGCATTTATTTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACT < SRR13385771.1882289/301‑1 (MQ=60)
CCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTAGGTAACGTAAGCAAAAATAATATTGCAGCCGACGGCCGCAGAAAATAACAcctacaaaaaaaaaaaaaaccggaaactaacaacaa > SRR13385771.537994/1‑264 (MQ=60)
CCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGACGGCCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGaagacaagaacaaagaaatacaaacacaaaatcggtaccttgcggcagc > SRR13385771.123501/1‑252 (MQ=60)
CCCCGTGCGTTCATCATTTACTGTCTCAGGGGGATGGTTTTGGAACTTTACGGGGTTGTAGTTGTAATTGCTATAAGTGACGTGCATTTATGTATATATATTTTCGTAAGTAATGAACATGGTTATGTTATATATTGTTTGAAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTAACGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATACCAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCA < SRR13385771.467023/301‑1 (MQ=60)
ATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTGGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTAAAGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAcacccagaaaacatccccaaagct > SRR13385771.272720/1‑276 (MQ=60)
ACGTCGTTGTAGTTGTAATTGCTAGAAGTGCCATTCATTTATGTATATATATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGG < SRR13385771.1322322/301‑1 (MQ=60)
GGCGTTGTAGTTTTAATTGTTATAATTTCCATGCATTTATGTATTTAGATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGGAATCAGGGAGAAGTTTAAGAGG‑A‑GAAAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCTGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGT < SRR13385771.1777522/301‑1 (MQ=60)
TGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑‑AAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAATAGCGAAAACCCGCGGAAGCATgtacaaagccaacccatacttgccccgcacaacccacaacacactcgagaacgaacacttaa > SRR13385771.1161629/1‑238 (MQ=60)
|
CCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATGGCGTATATGTGCCCATGGGAAGTCATAGTAATAGATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑AAAAAAA‑AAAAGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTAT > BK006934/375021‑375603
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
