Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCT  >  BK006934/375119‑375698
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                           
gtctaggctgttggctggagtggctgcggGCAGGGCTGTACCGCGAAGGTAGGTAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAGGTAATGAAGTTGCGCGCACGTGCTGACATCAGTTACTATCTCAGGGCGCTGGGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTTCCAGGGATTGATGTATATATATTTTCTTACGGAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAAag                                                                                                                                                                                                                                                                                           <  SRR13385772.857212/272‑3 (MQ=60)
    AGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GA                                                                                                                                                                                                                                                                                         <  SRR13385772.427661/297‑1 (MQ=60)
                   GGGACGCCGCGCAGGGCTGTACCTCCAAGGTGGATAAGAGAGCGGAGCACATGGGAAAATAGATATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCTTTGTAGTTGTAATTGCGATAAGGGCCATGCATTTATGTATATATGTTTTCTTACGTAATGAACATTGTGATTTTATATATTGTTTGCAATCAGAGAGAAGTGGAAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATA                                                                                                                                                                                                                                                                       <  SRR13385772.775830/301‑1 (MQ=60)
                                   GTGTACCGCCAAGGTAGATGAGAGAGCGTAGGACATGGGAAAAGGGAGAGACGGTATGTTACATCAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACAACAATTGCTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTGGTTGTAATTACTATAAGTGCCATGCATTTATGTATATATAATGTAGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGGGGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCG                                                                                                                                                                                                                                                       <  SRR13385772.45694/301‑1 (MQ=60)
                                                                                 AGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTTTCGGTCACGTGAGCAAAAATACTATTGCCGCCGCCGGCCGTAGATAATA                                                                                                                                                                                                         >  SRR13385772.528202/1‑300 (MQ=60)
                                                                                  GATACGGTATGTTACACAAGTCAAAGGAATGAACTTTCGCCCACGTGGGTACATCATTTACTATTTCAGGGCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAA                                                                                                                                                                                                        <  SRR13385772.444755/301‑1 (MQ=60)
                                                                                   ATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAAC‑GAGAGAGCCGTACCGCAATAAAATGGACCCCTGTCGGccacgcgagcgatcagaagagaacacccaggcacgcacgtcacaca                                                                                                                                                                                                        >  SRR13385772.1145645/1‑254 (MQ=60)
                                                                                     ACGTTATTTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCTTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGATAGAAGTTGAAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAA                                                                                                                                                                                                     <  SRR13385772.268376/301‑1 (MQ=60)
                                                                                                                                                                                       TTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAAaaagaaaacccgaccccaaaaaaaaagaacccgtgccggcccctgagtaaaaaaaaaaaacaccccaacatacctaaaaaaaaaaaaaaagagtaaacagaatcaccaacacctcaaatcccctactgtgaaaactactctgtcgccatcctctactctccaaaataatatagtatgtctgcttc                                                                                                    >  SRR13385772.127242/1‑116 (MQ=60)
                                                                                                                                                                                              tgcgttagatgtcattcattttagtatatgtattttcgtccgtacagaccaaggtgtagttatattttgtttggaatcaggtgggAGTTGAAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAT                                                                                             <  SRR13385772.888024/215‑1 (MQ=60)
                                                                                                                                                                                              TGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGCGAGCCGTAACGCAATACAATGGAACCTTGTCGGTAACGTGAGCAAAAATACTATTACCGCCCACGGCCTTAGATAATCACAAAGGAATAAAACAAAAAgagcgaatactcgagttaccttttccgatgctttccgcaagataaatcaacaaacaaacacaccactgacctataaaaccattaacacc                                                                                            >  SRR13385772.1244556/1‑212 (MQ=60)
                                                                                                                                                                                                    gagtgtcatgtatttatttattgATATTTTCGTAGGTAATGAACATGGTTATGTTATATATTGTGTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GGGAGTGCCGTACCGCAATAAAATGGACCCTTGTCGGTCAGGTGAGCAAAAATACTAGTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATA                                                                                     <  SRR13385772.1016497/278‑1 (MQ=60)
                                                                                                                                                                                                                       ATATTTATTTTCGTATTGAATGAACATGGTTAGGTTATATATTGCGTGCAATCAGATGGAAGTTGAAGATGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTTAGCAAAAAGACTATTGCCGCCGGCGGCCGGAGATAGTAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAATCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGC                                                                    <  SRR13385772.742445/300‑1 (MQ=60)
                                                                                                                                                                                                                         ATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGAACCTTGTCGATAACGTGAGAAAAAATACAATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAacggaaaatcgcggatgctttgtctaatatactgagatgtcaccggcatctactacacaacaatttggcacaaaaacttactatcatttcatatacaataaatacaaaaacttct                                                                >  SRR13385772.720947/1‑186 (MQ=60)
                                                                                                                                                                                                                                atctTACGTAATGAACATGGTTATGTTATATATTTTTTGCAATCAGAGAGAAGTTGGAGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGGGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCAGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTG                                                            <  SRR13385772.176694/295‑1 (MQ=60)
                                                                                                                                                                                                                                 TCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAACA‑CAAAAA‑‑GAGAGCCCCGTACCGCAATAACATGGACCCTTGTCGGACACGCCAGAAAAAATACTATTACCGCCCACGGCCGAAAATAATAACAAAGGAAAAAAAAAcaacgagcggaaacaaacaaaaaccacaccaatacctaaacagatactactcaatatacttaacacccattgggaaatcacacactcaaactaatcataacacaaaaacacacacccctaacatactt                                                         >  SRR13385772.998518/1‑173 (MQ=60)
                                                                                                                                                                                                                                              ACATGGTTATGTCATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑ACAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTAACGTTAGCAAAAATACTATTGCCGCAGACGGCCGGAGATAATAACAAAGGAATAAAAAAAAAAgagcaataactagctgaagtattgatggaaatattcagtagttatcgtcgattaacgaaaaatacttggggtaggaaccattacaagaaatcagactatataagattaaacgtcgtttttgtacttttactacccac                                            >  SRR13385772.561005/1‑164 (MQ=60)
                                                                                                                                                                                                                                                                    TTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAAAGGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAAATCGCGGAAGCATTACCGCAGCTTACCGAGAGTTGCCCCGGATAACCGACACATCATTGGGGTATGAAACATTATAAATATTTGATCTATATAAAGACAACAGCTTGATTTAGTCTTGTAATATCCCAGTGTAAACATAAAAATACAC                        >  SRR13385772.841081/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                              AGAGAAGTTGACGAGGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAAAAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGACTAGCCGATCCTTACCGAGAGCTACCGCGGATAACCGAcccacacttgcggaaggcaccattataacaatttcacctctataaaagaaacagtctacaccgcaacagcccacacctgccacaaagccccgtacaccaccaccctatccc            >  SRR13385772.891747/1‑190 (MQ=60)
                                                                                                                                                                                                                                                                                        AAGAAGAGAAAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCT  <  SRR13385772.752236/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                           
ATCTAGGCACGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAA‑A‑AAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCT  >  BK006934/375119‑375698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑