Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
6081 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACT > BK006934/375128‑375714
|
GGTGGCGGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGGGCGGAGCACATGGGAAAAGAGAGATACGGTATTTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCG < SRR13385771.983199/301‑1 (MQ=60)
TCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACATGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑ACGTACCGCAATAAAAT > SRR13385771.1900719/1‑300 (MQ=60)
CCAAGGTAGAGAAGAAAGCGGAGCACATGGGAAAGGAAAGATACGGTATGTTACAACAGTCAAAGTAATGAACTGTCCCCCACGTTCTTACATCATTTACTATCTCAGGCCGCTGCTTTTGGAACTTTTCGGCGTGGTAGTTGTAATTGCTATAAGTGCCATGCATGTATGTATATATATTTTCGTACGTAATGAACATGTTTATGTTATATATTTTTTGCAATCAGAGAGAAGTTGAAGAGT‑ATA‑‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTG < SRR13385771.170070/301‑1 (MQ=60)
aaagtaaataaggaagggacgaacagGGGAAAAGAGACATACGGTATGTTACAACATGCAAAGTAATGCACTTTCGCCCACGGGCGTACATCATTTACTTATTCAGGGCGCTGCGTTTGGGTCTTTGCGGCTTTGTAGTTTGAATTGCTATAAGGGCCATGCATTTATGTATTTATTTTTTCGTACGAAATGAACCTGGTTATGTTATATATTGTTTGAAATCAGAAGGAAGTTGAAAAGGAA‑A‑‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAG < SRR13385771.502131/275‑1 (MQ=60)
TGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGACACGTGcgaacaaatactatcgccccccccacc > SRR13385771.787132/1‑274 (MQ=60)
AAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑ACGTACCGCAATAAAATGGACACTTGTaggaacagtgagccaaaatacaattgcagacacagacaca > SRR13385771.292311/1‑260 (MQ=60)
agtatgatggttgtttaaaataagaaaattaagtgcttttcgcccactgctggaatttatttttatttcatgcttgttggtttgggaattttccgggttttttgttttaatttctataatggcgatgttttaatttaatttttttttcgtacgtaattaataggttttttttttttttttttgtcaatcaaggagaatttgaaagggtaaA‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAA < SRR13385771.127481/91‑1 (MQ=60)
aaatgCAAAGAAATGAACTGTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACAGGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAA < SRR13385771.1622210/293‑1 (MQ=60)
ACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTTTCGGTCACGTGAGCAACAATACTATTGCCGCAGACGGCACAAGATAAAAACAAAGGAATAAAAAC > SRR13385771.623589/1‑300 (MQ=60)
TCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTCGTTGTAATTGCTATAAGTGCCATGCAATTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑‑A‑AAAAAACAAAAGAAAGAG‑‑CCGTACCGCAATAAAATGGACCCTTttaggtccccctacccaaaacaatcttacctccaaacgccctcacaaataacaaacgactacacacaaaa > SRR13385771.211701/1‑230 (MQ=60)
GAACTTTCGCCCACGTGCGTACATCATTTACTATGTCAGGCCGCTGCGTTTGGAAATTTACGGGTTTGTAGTTGTAATTGCTATAAGTGCCAGGCATTTATTTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACT < SRR13385771.1882289/301‑1 (MQ=60)
CCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTAGGTAACGTAAGCAAAAATAATATTGCAGCCGACGGCCGCAGAAAATAACAcctacaaaaaaaaaaaaaaccggaaactaacaacaa > SRR13385771.537994/1‑264 (MQ=60)
CCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGACGGCCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGaagacaagaacaaagaaatacaaacacaaaatcggtaccttgcggcagc > SRR13385771.123501/1‑252 (MQ=60)
CCCCGTGCGTTCATCATTTACTGTCTCAGGGGGATGGTTTTGGAACTTTACGGGGTTGTAGTTGTAATTGCTATAAGTGACGTGCATTTATGTATATATATTTTCGTAAGTAATGAACATGGTTATGTTATATATTGTTTGAAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTAACGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATACCAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCA < SRR13385771.467023/301‑1 (MQ=60)
ATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTGGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTAAAGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAcacccagaaaacatccccaaagct > SRR13385771.272720/1‑276 (MQ=60)
ACGTCGTTGTAGTTGTAATTGCTAGAAGTGCCATTCATTTATGTATATATATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGG < SRR13385771.1322322/301‑1 (MQ=60)
GGCGTTGTAGTTTTAATTGTTATAATTTCCATGCATTTATGTATTTAGATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGGAATCAGGGAGAAGTTTAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCTGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGT < SRR13385771.1777522/301‑1 (MQ=60)
TGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑‑‑‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAATAGCGAAAACCCGCGGAAGCATgtacaaagccaacccatacttgccccgcacaacccacaacacactcgagaacgaacacttaa > SRR13385771.1161629/1‑238 (MQ=60)
aagtgccatgcatttaggtttagattgtttgttaggtaaggaacagggttagtttatgtggtttttggAATCAGAGAGAAGTGGAATAGG‑A‑G‑‑A‑AAAAAA‑AAAA‑AGAGAGGTCCTGACCGAAATAAAATGTATCCTTGTCGTTCACTGTAGCAAATATTCTATTGCGGCGGACGGTGTTAGATAATAACGAAGGAAT‑AAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGGCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATA < SRR13385771.1593995/233‑1 (MQ=60)
TGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTAACGAAATAAAATGGACCCTTGACGGTAACGGGAGCAAAAAAACTATatacgcgaaaggaggaagagaaaaaaaaaggaataaaaaaaaaaaagcgtaaaatagcgaaacaataaccatagagtactaaatttacatagctataacaaaaaaataataacgaaaaaaaaaatacaaaaatataataaacatca > SRR13385771.1609667/1‑154 (MQ=60)
TTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATCTTGTTTGCAATCCGAGCGAAGTTGAAGCGG‑C‑G‑‑ACAAAAAC‑ACAAGAGCGAG‑‑CCGTACCGCAATAAAATGGACCCTTGACGGACACGTGCGAAAAAATACTcttcacgacgcaggcacacgatcatacacacggcctaaaaaaaaaagaacgaaacaacccaacaacctcaacgaacattaacacaagccaccaaacccacaccacaaaaccataccccaaacaacatcaccacaaattaccaaccaacacccc > SRR13385771.1643092/1‑148 (MQ=60)
ATGTATATTTATTTTCGGACGTAAGTAACATGGTTATGGTATATAGTGTGTGCAATCAGAGAGAAGTTGGAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGGGAG‑‑CCGGACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAA < SRR13385771.1277124/300‑1 (MQ=60)
ATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATT < SRR13385771.895743/300‑1 (MQ=60)
TGTTTGAAATAAGGGAGAAGTGGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGAAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATAC < SRR13385771.778333/300‑1 (MQ=60)
GCAATCAGAGAGAAGTTGAAGAGG‑A‑GAAA‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCAAGTGAGCAAAAATAATATTGCAGCCGACAGCAGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCcagaaagaattaccgaagcttaccgagaataacccagacaaacaaaaacatcaatggcgtaggaaacattaaaaatatttgatatataaaaagaaaaaagataacactggtcatgaaatatcccatagaaaacataaaaaaaccaaa > SRR13385771.1778104/1‑153 (MQ=60)
CAATCAGCGAGAAGTTGAAGAGG‑A‑GA‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGAAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAACAAAAAGAGCGGTAACTAGCGGAAGCATTGACAAAGCTTAACGAGAGTTGCCGCGGcaacccgaacttcaattggcgaaggaaacattataattatttgttttatttcatacaacaaccttgatttcgaattataatatcccatcgtacccataaacatccaccccac > SRR13385771.771461/1‑189 (MQ=60)
TTGAAGAGG‑A‑GAAA‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGATCGGTAACGCGCGTAAGCATcttcgaagcttaccaagagtgccctcgaataaaagaaccaccaaacgggtatgaaatattataaaaattagatatatataaaagaaaaaacttaacttagtcctgtaatatccacatataaacataaaaataaacatcaaccaccattttccc > SRR13385771.688826/1‑148 (MQ=60)
AA‑AAAAGAGTGTG‑‑CCGGACCGCAATAAAATGGACCCGTGTCGGTCACGTGAGCAAAAATGCGATTGCCTCCGACGGCCGTAGATAATGACAAAGTAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATAGCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCTATGA < SRR13385771.1728436/301‑1 (MQ=60)
AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGAGGAAACATTGCCGATGCTTACCGAAAGTTGCCGCGGATAACCGAAACATCATTGGGGAAGGAAACATTAAAAATATTTAATAAAAATAAAGGAAAAACCTTGATTTGATTTTTTAATAACCAACTCAAAACAAAAAAATACACACATACCACACTTACACccccccatcaactcaatgaac > SRR13385771.121611/1‑280 (MQ=60)
|
CGTGGCTGCAGTGACTCCGCGCAGGGCTGTACCGCCAAGGTAGATAAGAGAGCGGAGCACGTGGGAAAAGAGAGATACGGTATGTTACAACAGTCAAAGTAATGAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGG‑A‑G‑‑A‑AAAAAA‑AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACT > BK006934/375128‑375714
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
