Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGC  >  BK006934/375231‑375818
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                          
GAACTTTCGCCCACGTGCGTACATCATTTACTATGTCAGGCCGCTGCGTTTGGAAATTTACGGGTTTGTAGTTGTAATTGCTATAAGTGCCAGGCATTTATTTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGGGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACT                                                                                                                                                                                                                                                                                                  <  SRR13385771.1882289/301‑1 (MQ=60)
          CCCCGTGCGTTCATCATTTACTGTCTCAGGGGGATGGTTTTGGAACTTTACGGGGTTGTAGTTGTAATTGCTATAAGTGACGTGCATTTATGTATATATATTTTCGTAAGTAATGAACATGGTTATGTTATATATTGTTTGAAATCAGAGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTAACGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATACCAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCA                                                                                                                                                                                                                                                                                        <  SRR13385771.467023/301‑1 (MQ=60)
                      ATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTGGCAATCAGAGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTAAAGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAcacccagaaaacatccccaaagct                                                                                                                                                                                                                                                                             >  SRR13385771.272720/1‑276 (MQ=60)
                                                           ACGTCGTTGTAGTTGTAATTGCTAGAAGTGCCATTCATTTATGTATATATATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGG                                                                                                                                                                                                                                       <  SRR13385771.1322322/301‑1 (MQ=60)
                                                             GGCGTTGTAGTTTTAATTGTTATAATTTCCATGCATTTATGTATTTAGATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGGAATCAGGGAGAAGTTTAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCTGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGT                                                                                                                                                                                                                                     <  SRR13385771.1777522/301‑1 (MQ=60)
                                                                        TGTAATTGCTATAAGTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑‑‑AAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAATAGCGAAAACCCGCGGAAGCATgtacaaagccaacccatacttgccccgcacaacccacaacacactcgagaacgaacacttaa                                                                                                                                                                                                                         >  SRR13385771.1161629/1‑238 (MQ=60)
                                                                                    aagtgccatgcatttaggtttagattgtttgttaggtaaggaacagggttagtttatgtggtttttggAATCAGAGAGAAGTGGAATAGGAG‑‑AAAAAAAAAAA‑AGAGAGGTCCTGACCGAAATAAAATGTATCCTTGTCGTTCACTGTAGCAAATATTCTATTGCGGCGGACGGTGTTAGATAATAACGAAGGAAT‑AAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGGCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATA                                                                                                                                                                                                             <  SRR13385771.1593995/233‑1 (MQ=60)
                                                                                                   ATGTATATTTATTTTCGGACGTAAGTAACATGGTTATGGTATATAGTGTGTGCAATCAGAGAGAAGTTGGAGAGGAGA‑AAAAAAAAAAAGAGGGAG‑‑CCGGACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAA                                                                                                                                                                                                <  SRR13385771.1277124/300‑1 (MQ=60)
                                                                                                             ATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATT                                                                                                                                                                                      <  SRR13385771.895743/300‑1 (MQ=60)
                                                                                                                                                 TGTTTGAAATAAGGGAGAAGTGGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGAAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATAC                                                                                                                                                  <  SRR13385771.778333/300‑1 (MQ=60)
                                                                                                                                                      GCAATCAGAGAGAAGTTGAAGAGGAGAAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCAAGTGAGCAAAAATAATATTGCAGCCGACAGCAGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCcagaaagaattaccgaagcttaccgagaataacccagacaaacaaaaacatcaatggcgtaggaaacattaaaaatatttgatatataaaaagaaaaaagataacactggtcatgaaatatcccatagaaaacataaaaaaaccaaa                                                                                                                                              >  SRR13385771.1778104/1‑153 (MQ=60)
                                                                                                                                                       CAATCAGCGAGAAGTTGAAGAGGAGA‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGAAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAACAAAAAGAGCGGTAACTAGCGGAAGCATTGACAAAGCTTAACGAGAGTTGCCGCGGcaacccgaacttcaattggcgaaggaaacattataattatttgttttatttcatacaacaaccttgatttcgaattataatatcccatcgtacccataaacatccaccccac                                                                                                                                           >  SRR13385771.771461/1‑189 (MQ=60)
                                                                                                                                                                     TTGAAGAGGAGAAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGATCGGTAACGCGCGTAAGCATcttcgaagcttaccaagagtgccctcgaataaaagaaccaccaaacgggtatgaaatattataaaaattagatatatataaaagaaaaaacttaacttagtcctgtaatatccacatataaacataaaaataaacatcaaccaccattttccc                                                                                                                              >  SRR13385771.688826/1‑148 (MQ=60)
                                                                                                                                                                                      aaaaaaaagagggggaccgtaccgaaaaaaaagggaccgtggtcggtaaggtaggaaaaatTACTATTGCGGCCGGCGGCGGTAGAAAATCACAAAGGATAAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAA                                                                                                               <  SRR13385771.1665015/240‑1 (MQ=60)
                                                                                                                                                                                       AAAAAAGAGTGTG‑‑CCGGACCGCAATAAAATGGACCCGTGTCGGTCACGTGAGCAAAAATGCGATTGCCTCCGACGGCCGTAGATAATGACAAAGTAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATAGCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCTATGA                                                                                                            <  SRR13385771.1728436/301‑1 (MQ=60)
                                                                                                                                                                                         AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGAGGAAACATTGCCGATGCTTACCGAAAGTTGCCGCGGATAACCGAAACATCATTGGGGAAGGAAACATTAAAAATATTTAATAAAAATAAAGGAAAAACCTTGATTTGATTTTTTAATAACCAACTCAAAACAAAAAAATACACACATACCACACTTACACccccccatcaactcaatgaac                                                                                                          >  SRR13385771.121611/1‑280 (MQ=60)
                                                                                                                                                                                                GGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGGGAGCAAAAAGACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGGAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTT                                                                                                   <  SRR13385771.391252/301‑1 (MQ=60)
                                                                                                                                                                                                  AG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCCCTCATCAACTCCATGACTGCTGGTTCT                                                                                                 >  SRR13385771.840662/1‑301 (MQ=60)
                                                                                                                                                                                                         TACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCAGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACAACCATTACACCCTCCAATCAACTCAATAACCGCTGGTTCTGCCCC                                                                                            >  SRR13385771.1655842/1‑301 (MQ=60)
                                                                                                                                                                                                               AATAAAATGGGCCCTTGGCGGGCGCGGGGGCAAAAATACTATTGCCGCCGACGGCCGTAAGTAATAACAAAGGAATAAAAAAAAAAGAGCGGTGACTCGCGGAAGCATTGCCGATGCTTACCGGGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAGATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGT                                                                                      <  SRR13385771.779623/301‑1 (MQ=60)
                                                                                                                                                                                                                ATAAAATGGACCCATGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTT                                                                                     <  SRR13385771.1624263/301‑1 (MQ=60)
                                                                                                                                                                                                                                  GGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAG                                                                   <  SRR13385771.946360/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                      CGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAA                               <  SRR13385771.829902/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                            AAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGA                         <  SRR13385771.1472907/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                          TAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTTAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTT           >  SRR13385771.1465670/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                AAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGG      >  SRR13385771.82626/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                   AAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGC  >  SRR13385771.1595118/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                          
GAACTTTCGCCCACGTGCGTACATCATTTACTATCTCAGGCCGCTGCGTTTGGAACTTTACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGC  >  BK006934/375231‑375818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑