Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAAT  >  BK006934/375309‑375860
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                            
tgcgttagatgtcattcattttagtatatgtattttcgtccgtacagaccaaggtgtagttatattttgtttggaatcaggtgggAGTTGAAGAGGAGAAAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAT                                                                                                                                                                                                                                                               <  SRR13385772.888024/215‑1 (MQ=60)
      gagtgtcatgtatttatttattgATATTTTCGTAGGTAATGAACATGGTTATGTTATATATTGTGTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑‑GGGAGTGCCGTACCGCAATAAAATGGACCCTTGTCGGTCAGGTGAGCAAAAATACTAGTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATA                                                                                                                                                                                                                                                       <  SRR13385772.1016497/278‑1 (MQ=60)
                         ATATTTATTTTCGTATTGAATGAACATGGTTAGGTTATATATTGCGTGCAATCAGATGGAAGTTGAAGATGAGAAAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTTAGCAAAAAGACTATTGCCGCCGGCGGCCGGAGATAGTAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAATCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGC                                                                                                                                                                                                                                      <  SRR13385772.742445/300‑1 (MQ=60)
                                  atctTACGTAATGAACATGGTTATGTTATATATTTTTTGCAATCAGAGAGAAGTTGGAGAGGAGAAAAAAAAAAAA‑‑GAGAGGGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCAGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTG                                                                                                                                                                                                                              <  SRR13385772.176694/295‑1 (MQ=60)
                                                                      TTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAAGGAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAAATCGCGGAAGCATTACCGCAGCTTACCGAGAGTTGCCCCGGATAACCGACACATCATTGGGGTATGAAACATTATAAATATTTGATCTATATAAAGACAACAGCTTGATTTAGTCTTGTAATATCCCAGTGTAAACATAAAAATACAC                                                                                                                                                                                          >  SRR13385772.841081/1‑300 (MQ=60)
                                                                                AGAGAAGTTGACGAGGAGAAAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAAAAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGACTAGCCGATCCTTACCGAGAGCTACCGCGGATAACCGAcccacacttgcggaaggcaccattataacaatttcacctctataaaagaaacagtctacaccgcaacagcccacacctgccacaaagccccgtacaccaccaccctatccc                                                                                                                                                                              >  SRR13385772.891747/1‑190 (MQ=60)
                                                                                          AAGAAGAGAAAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCT                                                                                                                                                                    <  SRR13385772.752236/301‑1 (MQ=60)
                                                                                                                 AGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGGGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCTCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCAGTGGGGTAGGAAACATTATAAAGATGTGATATACATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCATCGTAAACATAAAAATACACCCATACCACCATTACACTCccccatcaacccaataaatgctgg                                                                                                                                               >  SRR13385772.431197/1‑277 (MQ=60)
                                                                                                                                                                                              AATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTAACGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCGTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGAT                                                                  <  SRR13385772.346563/301‑1 (MQ=60)
                                                                                                                                                                                                                                 CGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCA                               <  SRR13385772.906306/301‑1 (MQ=60)
                                                                                                                                                                                                                                   CGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTTAAAAGCTTTTGGGATGCTTCTGATATCTCAGA                             <  SRR13385772.1030511/301‑1 (MQ=60)
                                                                                                                                                                                                                                                   GCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCT              >  SRR13385772.904025/1‑300 (MQ=60)
                                                                                                                                                                                                                                                   GCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGATTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTA             <  SRR13385772.112138/301‑1 (MQ=60)
                                                                                                                                                                                                                                                              GTTGCCGCGGATAACCGAACCATCATTGGTGTATGAAACATTATAAATAGTGGATATAGATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGGGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTTCTGGTTCTGCCCCCCCTGTTGATTACGCGTCGTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGAGCTCGGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAAT  <  SRR13385772.1225734/301‑1 (MQ=60)
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                            
TGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAA‑‑GAGAGAGCCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAAT  >  BK006934/375309‑375860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑