Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTG  >  BK006934/375290‑375844

ACGTCGTTGTAGTTGTAATTGCTAGAAGTGCCATTCATTTATGTATATATATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGG                                                                                                                                                                                                                                                                 <  SRR13385771.1322322/301‑1 (MQ=60)

  GGCGTTGTAGTTTTAATTGTTATAATTTCCATGCATTTATGTATTTAGATTTTCGTACGTAATTAACATGGTTATGTTATATATTGTTTGGAATCAGGGAGAAGTTTAAGAGGAGAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCTGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGT                                                                                                                                                                                                                                                               <  SRR13385771.1777522/301‑1 (MQ=60)

                         aagtgccatgcatttaggtttagattgtttgttaggtaaggaacagggttagtttatgtggtttttggAATCAGAGAGAAGTGGAATAGGAG‑AAAAAAAAAAA‑AGAGAGGTCCTGACCGAAATAAAATGTATCCTTGTCGTTCACTGTAGCAAATATTCTATTGCGGCGGACGGTGTTAGATAATAACGAAGGAAT‑AAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGGCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATA                                                                                                                                                                                                                                       <  SRR13385771.1593995/233‑1 (MQ=60)

                                        ATGTATATTTATTTTCGGACGTAAGTAACATGGTTATGGTATATAGTGTGTGCAATCAGAGAGAAGTTGGAGAGGAGAAAAAAAAAAAAGAGGGAG‑‑CCGGACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAA                                                                                                                                                                                                                          <  SRR13385771.1277124/300‑1 (MQ=60)

                                                  ATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAGAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATT                                                                                                                                                                                                                <  SRR13385771.895743/300‑1 (MQ=60)

                                                                                      TGTTTGAAATAAGGGAGAAGTGGAAGAGGAGAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGAAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATAC                                                                                                                                                                            <  SRR13385771.778333/300‑1 (MQ=60)

                                                                                            CAATCAGCGAGAAGTTGAAGAGGAGAAAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGAAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAACAAAAAGAGCGGTAACTAGCGGAAGCATTGACAAAGCTTAACGAGAGTTGCCGCGGcaacccgaacttcaattggcgaaggaaacattataattatttgttttatttcatacaacaaccttgatttcgaattataatatcccatcgtacccataaacatccaccccac                                                                                                                                                                     >  SRR13385771.771461/1‑189 (MQ=60)

                                                                                                                          aaaaaaaagagggggaccgtaccgaaaaaaaagggaccgtggtcggtaaggtaggaaaaatTACTATTGCGGCCGGCGGCGGTAGAAAATCACAAAGGATAAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAA                                                                                                                                         <  SRR13385771.1665015/240‑1 (MQ=60)

                                                                                                                           AAAAAAGAGTGTG‑‑CCGGACCGCAATAAAATGGACCCGTGTCGGTCACGTGAGCAAAAATGCGATTGCCTCCGACGGCCGTAGATAATGACAAAGTAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAAGATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATAGCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCTATGA                                                                                                                                      <  SRR13385771.1728436/301‑1 (MQ=60)

                                                                                                                             AAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGAGGAAACATTGCCGATGCTTACCGAAAGTTGCCGCGGATAACCGAAACATCATTGGGGAAGGAAACATTAAAAATATTTAATAAAAATAAAGGAAAAACCTTGATTTGATTTTTTAATAACCAACTCAAAACAAAAAAATACACACATACCACACTTACACccccccatcaactcaatgaac                                                                                                                                    >  SRR13385771.121611/1‑280 (MQ=60)

                                                                                                                                    GGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGGGAGCAAAAAGACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGGAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTT                                                                                                                             <  SRR13385771.391252/301‑1 (MQ=60)

                                                                                                                                      AG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCCCTCATCAACTCCATGACTGCTGGTTCT                                                                                                                           >  SRR13385771.840662/1‑301 (MQ=60)

                                                                                                                                             TACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCAGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACAACCATTACACCCTCCAATCAACTCAATAACCGCTGGTTCTGCCCC                                                                                                                      >  SRR13385771.1655842/1‑301 (MQ=60)

                                                                                                                                                   AATAAAATGGGCCCTTGGCGGGCGCGGGGGCAAAAATACTATTGCCGCCGACGGCCGTAAGTAATAACAAAGGAATAAAAAAAAAAGAGCGGTGACTCGCGGAAGCATTGCCGATGCTTACCGGGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAGATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGT                                                                                                                <  SRR13385771.779623/301‑1 (MQ=60)

                                                                                                                                                    ATAAAATGGACCCATGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTT                                                                                                               <  SRR13385771.1624263/301‑1 (MQ=60)

                                                                                                                                                                      GGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAG                                                                                             <  SRR13385771.946360/301‑1 (MQ=60)

                                                                                                                                                                                                          CGTAGATAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAA                                                         <  SRR13385771.829902/301‑1 (MQ=60)

                                                                                                                                                                                                                AAATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGA                                                   <  SRR13385771.1472907/301‑1 (MQ=60)

                                                                                                                                                                                                                              TAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTTAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTT                                     >  SRR13385771.1465670/1‑301 (MQ=60)

                                                                                                                                                                                                                                    AAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGG                                >  SRR13385771.82626/1‑300 (MQ=60)

                                                                                                                                                                                                                                       AAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGC                            >  SRR13385771.1595118/1‑301 (MQ=60)

                                                                                                                                                                                                                                                AACTCGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATGAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATA                    <  SRR13385771.1330188/300‑1 (MQ=60)

                                                                                                                                                                                                                                                          AGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTAC                                                                                                         <  SRR13385771.1698748/205‑1 (MQ=60)

                                                                                                                                                                                                                                                           GCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACG        >  SRR13385771.317332/1‑301 (MQ=60)

                                                                                                                                                                                                                                                               TGCCGATGCTTACCGAGAGTTGCTGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAA                                                                                                                                                                                                                        <  SRR13385771.1163219/89‑1 (MQ=60)

                                                                                                                                                                                                                                                                GCAGATGCTGACCGAGAGTTGCCGCGGATAACCGACACATCAGTGAGGTAGGAAACATTATAAATATTTGATATATATAAAAGAAAAAGCATGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCGCCATTTCACTCGCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATT   <  SRR13385771.50035/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                 CCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTACCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTG  <  SRR13385771.580365/301‑1 (MQ=60)

ACGGCGTTGTAGTTGTAATTGCCATAACTGCCATGCATTTATGTATATATATTTTCGTACGTAATGAACATGGTTATGTTATATATTGTTTGCAATCAGAGAGAAGTTGAAGAGGAG‑AAAAAAAAAAAGAGAGAG‑‑CCGTACCGCAATAAAATGGACCCTTGTCGGTCACGTGAGCAAAAATACTATTGCCGCCGACGGCCGTAGATAATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTG  >  BK006934/375290‑375844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`