Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
6081 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGT > BK006934/381394‑381941
|
ACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATCTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGA > SRR13385771.818848/1‑300 (MQ=60)
ACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAAT > SRR13385771.1109188/1‑301 (MQ=60)
CGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGTTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTTCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATAT < SRR13385771.1536399/301‑1 (MQ=60)
AAGTGTATGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTAT < SRR13385771.292962/301‑1 (MQ=60)
CCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATT < SRR13385771.1549214/301‑1 (MQ=60)
GCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTT < SRR13385771.1192724/301‑1 (MQ=60)
TAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGG > SRR13385771.695840/1‑301 (MQ=60)
AAAAAAGTCGAATGTTTTTATTAATTTGCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTTATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCATTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTGTTATTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGG < SRR13385771.544748/301‑1 (MQ=60)
AAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCT > SRR13385771.513468/1‑301 (MQ=60)
GAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTA < SRR13385771.251261/301‑1 (MQ=60)
TTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTAT > SRR13385771.195116/1‑301 (MQ=60)
AATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTA < SRR13385771.895717/301‑1 (MQ=60)
ACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGT > SRR13385771.1039286/1‑301 (MQ=60)
gggggggggggggggggggggggggggggggggggggggggggggggggggggggggcgcgagggggcgagggggagatgcagggggcgtaagatgGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATACTGGCAATCAGCTGTATCTACATTTTATTAATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTATAGCAATGCTTTGTTTCATTGCGAAC > SRR13385771.501921/97‑301 (MQ=60)
GTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAAC > SRR13385771.1147760/1‑301 (MQ=60)
GTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAAC > SRR13385771.501842/1‑301 (MQ=60)
TTTGGATGTTGATTTAAAAAGGCCAACATCATAATTATATCGAGAATGTACTACTAGTATATGCAGTTTTTTTAAAATTGCAGGGAATGACTAAAAGTTCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGATGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTAGTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTT < SRR13385771.841042/300‑1 (MQ=60)
AAAGGCCAACATCATAATGATAGCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTGTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCA < SRR13385771.296663/301‑1 (MQ=60)
TATATCGCGAATGTACTACGAGTATATGCAGTTTTCGTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAAC < SRR13385771.1547933/300‑1 (MQ=60)
ATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACA < SRR13385771.944093/300‑1 (MQ=60)
ATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGT < SRR13385771.1903726/301‑1 (MQ=60)
TACTATGATATGCAGTTTTCGTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACAT < SRR13385771.55307/172‑1 (MQ=60)
TTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCA > SRR13385771.1274129/1‑300 (MQ=60)
TTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTGTTTCCCACGTTGAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTGTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATTGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAA < SRR13385771.1170354/300‑1 (MQ=60)
ATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATT < SRR13385771.416178/301‑1 (MQ=60)
GACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTA > SRR13385771.1555989/1‑300 (MQ=60)
GCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTATATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTTGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTTCGAACGCCTACGTGTCTTGTTAACTTATCATTGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGCACAATTACGCCAAATAGTCCGGTTTTCAACATTCAAGATTTA > SRR13385771.1669010/1‑300 (MQ=60)
GTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGC < SRR13385771.412215/301‑1 (MQ=60)
TTTCCCACTTTTAGTAGTACTGAAGCGTAGATGGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAA < SRR13385771.1714336/300‑1 (MQ=60)
TTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTAGCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAA < SRR13385771.115483/300‑1 (MQ=60)
ACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAAT < SRR13385771.371392/300‑1 (MQ=60)
GAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGT < SRR13385771.460484/300‑1 (MQ=60)
|
ACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGT > BK006934/381394‑381941
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |