Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGGAACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAA  >  BK006934/381389‑381976
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                           
ACGGAACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTT                                                                                                                                                                                                                                                                                                 <  SRR13385772.1261154/301‑1 (MQ=60)
    AAACCAAAAAATCAATCAACAGGGTAAGCGGGAAACAAAAAAAGTGTAGGAACCGCACTATAAAAAGTAGAAGGTTTGTATTAATTATCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGCTTTTGATTTAACAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATCGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGA                                                                                                                                                                                                                                                                                             <  SRR13385772.323407/301‑1 (MQ=60)
                  ATCACCAGGGTAAGAGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAATGTTTGTATTAATTTTCCACACCTCTTTAGTTCTTTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGG                                                                                                                                                                                                                                                                               <  SRR13385772.474732/301‑1 (MQ=60)
                                             AAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTAT                                                                                                                                                                                                                                                    >  SRR13385772.1121063/1‑301 (MQ=60)
                                                   AGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATA                                                                                                                                                                                                                                               <  SRR13385772.322925/300‑1 (MQ=60)
                                                       ACCGCACTATAAAAAGTCGAAGGTTTGTATTCATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTAT                                                                                                                                                                                                                                          >  SRR13385772.491752/1‑301 (MQ=60)
                                                              TATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTG                                                                                                                                                                                                                                                                                                        <  SRR13385772.12265/232‑1 (MQ=60)
                                                                         GAAGGTTTGTATTATTTTTCCATACCTCTTTAGTTCTGTTATAATTAGATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTA                                                                                                                                                                                                                        <  SRR13385772.253824/301‑1 (MQ=60)
                                                                          AAGGTTTGTATTAATTTTCCACACCTCTTTAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAA                                                                                                                                                                                                                       <  SRR13385772.380102/301‑1 (MQ=60)
                                                                                                       TAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTCTACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTC                                                                                                                                                                                            >  SRR13385772.1239738/1‑299 (MQ=60)
                                                                                                                TATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCGTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACG                                                                                                                                                                                  <  SRR13385772.675013/300‑1 (MQ=60)
                                                                                                                TATAATTAAATTCGTTTTGGATTTTGAGTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACG                                                                                                                                                                                  <  SRR13385772.241843/300‑1 (MQ=60)
                                                                                                                                               AAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCC                                                                                                                                                  >  SRR13385772.662545/1‑301 (MQ=60)
                                                                                                                                                        ACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGT                                                                                                                                                                                                                         >  SRR13385772.1043964/1‑221 (MQ=60)
                                                                                                                                                          ATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTT                                                                                                                                                     <  SRR13385772.324555/287‑1 (MQ=60)
                                                                                                                                                                                            TGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTAATTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATCAC                                                                                                     >  SRR13385772.252517/1‑301 (MQ=60)
                                                                                                                                                                                                        AAAATTGCAGGGAATGACTAAAATCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCA                                                                                         <  SRR13385772.183904/301‑1 (MQ=60)
                                                                                                                                                                                                                       GACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTATATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAA                                                                          <  SRR13385772.242473/301‑1 (MQ=60)
                                                                                                                                                                                                                               GGCCACGTTTGTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCGTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAA                                                                  <  SRR13385772.873888/301‑1 (MQ=60)
                                                                                                                                                                                                                                 CCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGCTGTTGATCATTTCTGAAATGAGATATTGGGAATAAGCTGTATCTACATCTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCAAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGT                                                                >  SRR13385772.440208/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                    AGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGTCAGGATGAAAAATTACGCCAAATAGGCAGGTTTGCAATATTAAAGAGTTAAGTATGCAAAATGTACAAAAAGTTAATGGTCAAAGTA                              >  SRR13385772.920698/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                         GATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTA                        <  SRR13385772.485648/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                   TGCTGGGCGCCTGATGTTGATCAGTGCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTGATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATAT               <  SRR13385772.223322/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                ATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCCGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTATAAAACAGGTTCACAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAA  >  SRR13385772.836190/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                           
ACGGAACCCAAAAAATCAATCACCAGGGTAAGCGGGAAAAAAAAAAAGTGTAGGAACCGCACTATAAAAAGTCGAAGGTTTGTATTAATTTTCCACACCTCTTTAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAA  >  BK006934/381389‑381976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑