Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATA‑‑ATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAA  >  BK006934/382780‑383370

CCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTA                                                                                                                                                                                                                                                                                                             <  SRR13385771.383040/298‑1 (MQ=60)

          ACGTTAAAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGA                                                                                                                                                                                                                                                                                                 <  SRR13385771.1153004/300‑1 (MQ=60)

           CGTTAAACCAGTGAAAATACCATATCAATTAAGATATACCTTGTCAACAATATGGCTGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATT                                                                                                                                                                                                                                                                                               <  SRR13385771.100989/301‑1 (MQ=60)

                AAACAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTA‑T‑TT                                                                                                                                                                                                                                                                                        >  SRR13385771.549366/1‑301 (MQ=60)

                   CAGTGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTA‑T‑TTTtc                                                                                                                                                                                                                                                                                     <  SRR13385771.348149/301‑3 (MQ=60)

                      TGAAAATACCATATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCCCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGCTGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTA‑T‑TTTtcatt                                                                                                                                                                                                                                                                                  >  SRR13385771.755425/1‑296 (MQ=60)

                           ATACCATATCAATTAAGATATACATTGTCCACCATATGGATGTATCTCTGAGTTCATTTCGACGACTAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGACAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGT                                                                                                                                                                                                                                                                               >  SRR13385771.1421687/1‑300 (MQ=60)

                                         AAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTA‑T‑TT                                                                                                                                                                                                                                                                                        >  SRR13385771.201045/1‑276 (MQ=60)

                                          AGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTAGGATG                                                                                                                                                                                                                                                               >  SRR13385771.168179/1‑301 (MQ=60)

                                              ATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAATACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCG                                                                                                                                                                                                                                                           >  SRR13385771.1430900/1‑301 (MQ=60)

                                                                        CTCTGAGTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGT                                                                                                                                                                                                                                 >  SRR13385771.1666900/1‑301 (MQ=60)

                                                                              GTTCATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTG                                                                                                                                                                                                                            >  SRR13385771.1196557/1‑300 (MQ=60)

                                                                                  ATTTCGACGAATAATTCTACCTCTCTTGGTGGAAAGCCGTCCCTCCCCCTGGTGGAACCCATCAGCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAA                                                                                                                                                                                                                       <  SRR13385771.1709295/301‑1 (MQ=60)

                                                                                      CGACGAATAATTCTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAAT                                                                                                                                                                                                                   >  SRR13385771.205024/1‑301 (MQ=60)

                                                                                                   TACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCACGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAAT                                                                                                                                                                                                       >  SRR13385771.1499048/1‑300 (MQ=60)

                                                                                                         TCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGAT                                                                                                                                                                                                                                                        >  SRR13385771.1523378/1‑245 (MQ=60)

                                                                                                          CTTGGTGTAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGGTGCCGCACCGACGAACGTCTCTCGAGAGGTCGTCTCTCCGTCTGAACATACTCACTGTTGGTACGATGCAGCGGCGGTCTTACTGCATTTTTGACATCGATATTTTTTTGTATCAAGACTTCTACCAATGTCATGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGGGACAAAGAATGCTATGGAAAATA‑‑ATA‑‑TG                                                                                                                                                                                             <  SRR13385771.1626980/299‑1 (MQ=60)

                                                                                                             GGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATA‑‑TGTgta                                                                                                                                                                                         <  SRR13385771.775054/300‑4 (MQ=60)

                                                                                                                           CCTCCCCCTGGCGGAACCCATCCTCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATT                                                                                                                                                                            <  SRR13385771.1601842/301‑1 (MQ=60)

                                                                                                                                    GGCGGAACCCATCATCCCTTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTatcat                                                                                                                                                                   <  SRR13385771.535238/301‑6 (MQ=60)

                                                                                                                                        GAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCA                                                                                                                                                               <  SRR13385771.1908207/301‑1 (MQ=60)

                                                                                                                                                        CGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGT                                                                                                                                                >  SRR13385771.770619/1‑300 (MQ=60)

                                                                                                                                                             AACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATAATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATT                                                                                                                                          >  SRR13385771.625372/1‑301 (MQ=60)

                                                                                                                                                                      GTCGGCGTTGCCGCACCGACGAACGTCTCTCGAGAGGTCGTCTCTCCGTCTGAACATACGCACGGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCC                                                                                                                                 <  SRR13385771.21684/301‑1 (MQ=60)

                                                                                                                                                                          GCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGT                                                                                                                             <  SRR13385771.751256/301‑1 (MQ=60)

                                                                                                                                                                              TGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGCTATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGACACTACTATG‑‑TGTAGCAACATAACCAATTAATTATCATTGCATTAACTTTTGGAAGTACTATTTACAATGCCATGTTTTT                                                                                                                         >  SRR13385771.1822220/1‑301 (MQ=60)

                                                                                                                                                                               GCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGTACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTA                                                                                                                         <  SRR13385771.1870422/300‑1 (MQ=60)

                                                                                                                                                                                  GGACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAAGTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTT                                                                                                                     <  SRR13385771.1183758/301‑1 (MQ=60)

                                                                                                                                                                                   CACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTG                                                                                                                    <  SRR13385771.572639/301‑1 (MQ=60)

                                                                                                                                                                                       GACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGTATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTAC                                                                                                                >  SRR13385771.1172204/1‑301 (MQ=60)

                                                                                                                                                                                          GAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCA                                                                                                                                                               <  SRR13385771.946568/251‑1 (MQ=60)

                                                                                                                                                                                             CGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGATTTATGTTGTTACAGTAgt                                                                                                          >  SRR13385771.855843/1‑299 (MQ=60)

                                                                                                                                                                                                 TCTCTAGAGGTCGTTTCTCCGTCTGAACATACGGACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTAAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAgttta                                                                                                       <  SRR13385771.1609668/300‑6 (MQ=60)

                                                                                                                                                                                                                  TCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCA                                                                                                                                                  >  SRR13385771.303071/1‑240 (MQ=60)

                                                                                                                                                                                                                             ATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATAAATTAGCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCG                                                                          <  SRR13385771.279629/301‑1 (MQ=60)

                                                                                                                                                                                                                                     TGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTACAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTT                                                                   >  SRR13385771.649508/1‑300 (MQ=60)

                                                                                                                                                                                                                                         ggtaaaatgaagaggaagtctgactGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTGTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTCTATGTTGGTACAGTAGTTTATTGACATCCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAAC                                                              >  SRR13385771.1340125/26‑301 (MQ=60)

                                                                                                                                                                                                                                         GGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTGCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGGCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAAC                                                              <  SRR13385771.892479/301‑1 (MQ=60)

                                                                                                                                                                                                                                                  CAGCGGCGGTCTGACTGCATGTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTT                                                                                                                                                                                                                                            <  SRR13385771.1835845/120‑1 (MQ=60)

                                                                                                                                                                                                                                                                   CATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACA                                     >  SRR13385771.881365/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                      TTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTACCACTGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAACCGGTTAAATATTGAAAAAGTTTCACAAGAC                                 >  SRR13385771.1872306/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                                GATATTTTTTTTTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAA                       <  SRR13385771.1518510/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                GATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCA                        >  SRR13385771.1340719/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                                         TTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATC               <  SRR13385771.1765117/300‑1 (MQ=60)

                                                                                                                                                                                                                                                                                           GTATCAAGACTTCTACCAATGTCAGGATTTA‑TGTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATTTAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATGGTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTGCGCTTTCTTAAAACGGTTAAATAGTGAAAAAGTTACACAAGACACGAAATCAAAAAGGATCCAT            <  SRR13385771.1121276/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                     TTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTAACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAA                                                                                                                                                                                  >  SRR13385771.1820779/1‑125 (MQ=60)

                                                                                                                                                                                                                                                                                                      TCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAACGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAA  >  SRR13385771.1281932/1‑300 (MQ=60)

CCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATTAAGATATACATTGTCAACAATATGGATGTATCTCTGAGTTCATTTCGACGAATAATTTTACCTCTCTTGGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATA‑‑ATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAA  >  BK006934/382780‑383370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`