Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGC  >  BK006934/383336‑383932
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                        
AGACACGAAATCAAAAAGGATCCATATTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTAAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGATGATATATATATAATATGGAATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACT                                                                                                                                                                                                                                                                                                          <  SRR13385771.205072/301‑1 (MQ=60)
      GAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATA                                                                                                                                                                                                                                                                                                    <  SRR13385771.1156381/301‑1 (MQ=60)
                  GATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGAT                                                                                                                                                                                                                                                                                        <  SRR13385771.511376/301‑1 (MQ=60)
                                 AAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAAT                                                                                                                                                                                                                                                                         >  SRR13385771.1751456/1‑301 (MQ=60)
                                                           AAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGC                                                                                                                                                                                                                                               <  SRR13385771.1057796/301‑1 (MQ=60)
                                                               AAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGG                                                                                                                                                                                                                                           >  SRR13385771.1313872/1‑301 (MQ=60)
                                                                  ATTAAAAAAAGTCAAAGCTACACTTGCATACTTTGAACTGGTTTTTCAAAGCTGTCTCCACGTGGAAATGTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATGTAGTGATTTTGCTGCCATAGGCTCAAAGACCCCGTTTCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAAGTTGAATGTCGGTGTACTTCCACGCTGGTATGCTCGGTCG                                                                                                                                                                                                                                        <  SRR13385771.1729018/301‑1 (MQ=60)
                                                                          AAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCT                                                                                                                                                                                                                                <  SRR13385771.450198/301‑1 (MQ=60)
                                                                                       ACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTC                                                                                                                                                                                                                   >  SRR13385771.1500397/1‑301 (MQ=60)
                                                                                                CTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTCTCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCACGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGCACTCACCTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCACTACAGTCCTCTTTGAT                                                                                                                                                                                                          >  SRR13385771.1881396/1‑301 (MQ=60)
                                                                                                  TTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGAT                                                                                                                                                                                                          <  SRR13385771.117138/299‑1 (MQ=60)
                                                                                                                AAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCA                                                                                                                                                                                          <  SRR13385771.1288033/301‑1 (MQ=60)
                                                                                                                                                      CGATTATCAAAAATGGTGGTTTTGTTAAGACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATGATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGAGTTTGATCCTGTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTGGCCAATACAGTCATCTGTGAGGTCGTGAACGCATTCATAAATATTGGTGCTCTATGTGTCATTTTAATCATACTT                                                                                                                                                    <  SRR13385771.1449181/301‑1 (MQ=60)
                                                                                                                                                                 AATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACGATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAG                                                                                                                                         <  SRR13385771.919136/301‑1 (MQ=60)
                                                                                                                                                                                  TACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGCACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCT                                                                                                                         >  SRR13385771.677655/1‑300 (MQ=60)
                                                                                                                                                                                    CAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGCCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATT                                                                                                                      <  SRR13385771.1282562/301‑1 (MQ=60)
                                                                                                                                                                                       AAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACACCGTTGCCATTAAGTTCGGTAATAAAGTCTAAAACCCATCTCATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTTGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATACCATAAGACAGAAGTATACTGCTATTGGC                                                                                                                   >  SRR13385771.1488463/1‑301 (MQ=60)
                                                                                                                                                                                            GATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGG                                                                                                                <  SRR13385771.1704833/299‑1 (MQ=60)
                                                                                                                                                                                                  TATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCCCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAAT                                                                                                         >  SRR13385771.1717822/1‑300 (MQ=60)
                                                                                                                                                                                                      TAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTACGAATATCTC                                                                                                    >  SRR13385771.1218338/1‑301 (MQ=60)
                                                                                                                                                                                                                       ATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAAC                                                                                   >  SRR13385771.511503/1‑301 (MQ=60)
                                                                                                                                                                                                                                    ATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGAT                                                                       >  SRR13385771.1603897/1‑300 (MQ=60)
                                                                                                                                                                                                                                      GCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAA                                                                     <  SRR13385771.994595/300‑1 (MQ=60)
                                                                                                                                                                                                                                      GCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAA                                                                     <  SRR13385771.11690/300‑1 (MQ=60)
                                                                                                                                                                                                                                                      GCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGT                                                     <  SRR13385771.353661/300‑1 (MQ=60)
                                                                                                                                                                                                                                                       CCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTACATTTGACTGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGCTTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGCATATCACTACTTTTTCCAATTAACATTGCTATCGATAATATTTACCTTGGTGGT                                                     >  SRR13385771.1994/1‑299 (MQ=60)
                                                                                                                                                                                                                                                                              TAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTG                                             <  SRR13385771.932848/284‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        CAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGC  >  SRR13385771.54597/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                        
AGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATACTTCGTGGC  >  BK006934/383336‑383932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑