Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATAC  >  BK006934/383385‑383924
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                
ATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCAC                                                                                                                                                                                                                                                 >  SRR13385772.1041497/1‑301 (MQ=60)
                                AGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGACTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAAT                                                                                                                                                                                                                 >  SRR13385772.572033/1‑301 (MQ=60)
                                                                          CCACGTGGAAAGTTGATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGGTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATAGGCTCAAAGACCCCGTTGCCATTATGTTCGGGAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCGTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGG                                                                                                                                                                        <  SRR13385772.767612/300‑1 (MQ=60)
                                                                            ACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGCAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATT                                                                                                                                                                                                                             >  SRR13385772.548488/1‑245 (MQ=60)
                                                                                       TTATTTCATCAATACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTC                                                                                                                                                           <  SRR13385772.253637/300‑1 (MQ=60)
                                                                                               TCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATC                                                                                                                                                  >  SRR13385772.540504/1‑301 (MQ=60)
                                                                                                                AATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAGTTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAG                                                                                                                                 <  SRR13385772.564377/301‑1 (MQ=60)
                                                                                                                           tcttcctcccccctctcatatatctctcctctttccattaaTGATTTTGCTTCCATATGCTCAAACCCCCCATTCCCCTTCTGTTCTGTAATAAACTCTAACCCCCATCTAATACTTTCAAACTCACCTCTTATACATCCTTTTCATCCTTTAAAGTTCAATCTCTATGTACTACCACGCTGTTATCCTCGGTCGATTTATCTTTCCAATACAGTCATCTTTTATGTCGGGAACCCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTAT                                                                                                                       <  SRR13385772.790708/259‑1 (MQ=60)
                                                                                                                                                  ATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACTCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACA                                                                                                                              <  SRR13385772.955757/270‑1 (MQ=60)
                                                                                                                                                                   GTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAAT                                                                               <  SRR13385772.246623/300‑1 (MQ=60)
                                                                                                                                                                     GATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAA                                                                            <  SRR13385772.1038943/301‑1 (MQ=60)
                                                                                                                                                                          TGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAGCCCATCTGATACTTTCGAACTCGACTATTATACATGAATTTGATCCTTTAAAGGTGAAGGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGGCATCTTTGATGGCGGGAACGCATTCATAAATAGTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATT                                                                        <  SRR13385772.524737/300‑1 (MQ=60)
                                                                                                                                                                                      CTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAAT                                                                               >  SRR13385772.731781/1‑281 (MQ=60)
                                                                                                                                                                                                            TGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTATCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTGTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGT                                      <  SRR13385772.535078/300‑1 (MQ=60)
                                                                                                                                                                                                                 gggaagaaaggctcaaacccagagcataaggtcgacCTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTT                                >  SRR13385772.374170/37‑301 (MQ=60)
                                                                                                                                                                                                                 GGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTA                                <  SRR13385772.464825/301‑1 (MQ=60)
                                                                                                                                                                                                                       AAAGTCTAAAACCCATCTAATACTTTCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCC                          >  SRR13385772.273073/1‑301 (MQ=60)
                                                                                                                                                                                                                                                TCGAACTCAACTATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCTTGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATGACATAAGACAGAAGTATACTGCTATTGGCAGGTCCGAATATCTCTACTTTTTCCAATTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCGCCCCCCGGCTCTGGGTCATATCCATAC  <  SRR13385772.185906/300‑1 (MQ=60)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                
ATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCACGTGGAAAGTTTATTTCATCAAAACTATTATCAAAAATTGTGGTTTTGTTAATACAAAAGCTGATATATATATAATATGGCATTTAGTGATTTTGCTGCCATATGCTCAAAGACCCCGTTGCCATTATGTTCGGTAATAAAGTCTAAAACCCATCTAATACTTTCGAACTCAACAATTATACATGATTTTGATCCTTTAAATTTGAATGTCGGTGTACTGCCACGCTGTTATGCTCGGTCGATTGATCTTGCCAATACAGTCATCTTTGATGTCGGGAACGCATTCATAAATATTGGTGCTCTAGGTGTCATTTTAATCATACTTTATAACATAAGACAGAAGTATACTGCTATTGGCAGGTCTGAATATCTCTACTTTTTCCAACTAACATTGCTATTGATAATATTTACCTTGGTGGTAGACTGTGGTGTATCTCCCCCCGGCTCTGGGTCATATCCATAC  >  BK006934/383385‑383924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑