Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCA  >  BK006939/337373‑337971

ACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCAGAAAACTACTATCTCGAACGAATAGTTAGAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGGTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCC                                                                                                                                                                                                                                                                                                           <  SRR13385771.1078666/301‑1 (MQ=60)

                AATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCAT                                                                                                                                                                                                                                                                                                   >  SRR13385771.1321800/1‑293 (MQ=60)

                      AGTGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATAGACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTAGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCGGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCGTCCATTTATCAGCATGAT                                                                                                                                                                                                                                                                                      <  SRR13385771.1025182/300‑1 (MQ=60)

                            GTTATTAATCGGAAAAATACTAACTCGAACGAATAGTTAAAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATATTTTT                                                                                                                                                                                                                                                                                <  SRR13385771.63437/300‑1 (MQ=60)

                                     CGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAAT                                                                                                                                                                                                                                                                     <  SRR13385771.1035858/301‑1 (MQ=60)

                                                          GAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTAGAATAATCCTTTCACTCGTTGAAGT                                                                                                                                                                                                                                                >  SRR13385771.547274/1‑300 (MQ=60)

                                                                            AATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAA                                                                                                                                                                                                                               >  SRR13385771.1353967/1‑300 (MQ=60)

                                                                                 AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTT                                                                                                                                                                                                                          >  SRR13385771.713054/1‑301 (MQ=60)

                                                                                    tagtagaagatggtatatgatatgtaagtgtgactggagttcaacgtgtgctcttccgatctAACTTGTTGTAGTTTTATTCCGTGGGGTGGAGGGTGAATTTTTTTTATGTAGTTTTAAAGAACAAAACAGAAGTTTTTATACTTAGCACTAGAATATCCAGTTTTAATTTTCTCTGTCAGAATCCGAATTGGTTGGTTTTCTTTGTTTTACCAGCCTCTTCCATTTATTGGCATGATA‑‑TTTTTTTTTAGTATGGTCCTTTTTATTGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTT                                                                                                                                                                                                                       <  SRR13385771.1398608/238‑1 (MQ=60)

                                                                                               AAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGCACTTGTTGTAGTTTTCTTCCGTGGGGAGGAGGGCGAATTTTTTTTCTTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATACTATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTCTCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTACAGGCATTA                                                                                                                                                                                                             >  SRR13385771.1694837/1‑300 (MQ=60)

                                                                                                        ATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTACGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCCATCGTTGACGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACAC                                                                                                                                                                                                     >  SRR13385771.1309245/1‑299 (MQ=60)

                                                                                                                   ACTAATATACACTAATTGTCCTTGATCACAGAACTTGTTGTAGTTTTATTCCGAGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAACACAGAAGTATATATACTTAGCACTATAATATACAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTATTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTAGTTTGTGGGACAAGAAAAGTTGTTAAAGGAATAAACGTAAACAGTGATTTGCTG                                                                                                                                                                                         >  SRR13385771.157517/1‑300 (MQ=60)

                                                                                                                     TAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACC                                                                                                                                                                                      >  SRR13385771.1852999/1‑301 (MQ=60)

                                                                                                                       ATATACACTAATTGTCCTTGAGAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTAGATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTTGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCA                                                                                                                                                                                    <  SRR13385771.384895/301‑1 (MQ=60)

                                                                                                                         ATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATT                                                                                                                                                                                  >  SRR13385771.1847922/1‑301 (MQ=60)

                                                                                                                               TAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTT                                                                                                                                                                           >  SRR13385771.1055198/1‑301 (MQ=60)

                                                                                                                                AATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTT                                                                                                                                                                           <  SRR13385771.1428914/301‑1 (MQ=60)

                                                                                                                                      CCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACT                                                                                                                                                                     <  SRR13385771.684345/301‑1 (MQ=60)

                                                                                                                                                   ACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTG                                                                                                                                                        <  SRR13385771.831659/301‑1 (MQ=60)

                                                                                                                                                      TGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTT                                                                                                                                                      <  SRR13385771.847634/300‑1 (MQ=60)

                                                                                                                                                                             AGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTT                                                                                                                                                                                                                          <  SRR13385771.2210/209‑1 (MQ=60)

                                                                                                                                                                                             TTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCG                                                                                                              >  SRR13385771.1389101/1‑301 (MQ=60)

                                                                                                                                                                                                  TTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGT                                                                                                          <  SRR13385771.1568275/300‑1 (MQ=60)

                                                                                                                                                                                                       TTTAAAGAACAAACCAGAAGTCTATATACTTAGCACTATAATCTCCAGTTTCAATTTGCTCTGTCAGCATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCCTTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTAATTACGCTTTTTCAgatcggaagagcacccgtatgccctaccgtcacccttgcatctcgtatgacgtcttctgcttgac                                                                                                      >  SRR13385771.213756/1‑235 (MQ=60)

                                                                                                                                                                                                         TAAATAACAAAACAGAAGTCTATAGACTTAGCACTATAAGATCCAGTTTCAATTTGCGTTGGCAGAATCCTAATTGGCTGTTTTTGTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑GTTTTTTTTTATAATAATCCTTTCAATTGTTGAAGGAGTTTGTGGTAAAATAAAAGTTGTTAAAGTCATTAACGTACACAGTGATTTGCTGACTCAGTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATAGTAACATGTCTAAATGGCTATGTGCCGTCGTAGCAGAA                                                                                                   <  SRR13385771.1863083/300‑1 (MQ=60)

                                                                                                                                                                                                                                          CTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCG                                                                 >  SRR13385771.132361/1‑301 (MQ=60)

                                                                                                                                                                                                                                                          CAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGAT                                                  >  SRR13385771.940364/1‑300 (MQ=60)

                                                                                                                                                                                                                                                            ATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATT                                               >  SRR13385771.664567/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                        AGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAAGAATCCTTTCAATCGTTGAAGTAGTTTGTGGTAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTTCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGAGATATGAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAAGCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGTAAAA                                   <  SRR13385771.1679874/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                          AATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTCAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAA                                  >  SRR13385771.1392191/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                                    GGCTGTTTTTCTTTGTTTTACTATCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGGTTGTGGTAAAAGAAAAGTTGTTAAAGGCATTAACTTACACAGTTATGTGCTGGCTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCTATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAAT                       <  SRR13385771.597738/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                  GTTTTACCCACACCTTGCATTTTTCAGCATGATA‑GTTTTGTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTGAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGAGTTGTCACTAATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATGATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATC          <  SRR13385771.269880/300‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                  GGTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATC          <  SRR13385771.66110/300‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                       ACCACCCCCTTCAATTAATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGGAGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGTCAATCATCACTTTAAAACCGAGGCCACAATCGAGAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAAT     <  SRR13385771.434046/300‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                          ACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCA  >  SRR13385771.1530622/1‑300 (MQ=60)

ACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCA  >  BK006939/337373‑337971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`