Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA  >  BK006939/337410‑337979
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                
CGAAAAACTACTAGCCCGAACGAATAGTTATAATTAATAAATG‑‑AAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAAATGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAAT                                                                                                                                                                                                                                                                             <  SRR13385772.290162/300‑1 (MQ=60)
    AAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAAAAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGCAGGGAGGAGGGAGAATTTTTTTTAATTAGTTTTAAAGACCAACACAGAAGTCTATATCCTTAGCACTATAATATCCAGTTTAAATTTGCTCTGTCAGAATCCGACTTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATC                                                                                                                                                                                                                                                                         >  SRR13385772.16346/1‑301 (MQ=60)
                            GATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACGCTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGAGAGGAGGGTGAATTGTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACGTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTG                                                                                                                                                                                                                                                  <  SRR13385772.1293317/300‑1 (MQ=60)
                                  ataaacaatgAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGGTTGATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTAGAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTGTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAA                                                                                                                                                                                                                                            <  SRR13385772.521395/291‑1 (MQ=60)
                                    ATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTTTCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTAAATCTTTGAAGTAGTTTGTGGGAA                                                                                                                                                                                                                                            >  SRR13385772.690668/1‑298 (MQ=60)
                                                                                                              ACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATAGACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGGTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTG                                                                                                                                                                <  SRR13385772.717302/301‑1 (MQ=60)
                                                                                                                                                    TTTTTTTATTTAGTTATAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCACTTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCCCCCCCTTCCATTTATCCGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCCTTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAACATTCGATATATTACCATGACTAAAGGGCTATGG                                                                                                                          >  SRR13385772.903219/1‑301 (MQ=60)
                                                                                                                                                       TTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTC                                                                                                                        <  SRR13385772.28675/300‑1 (MQ=60)
                                                                                                                                                            TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCACATTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGT                                                                                                                  >  SRR13385772.955468/1‑301 (MQ=60)
                                                                                                                                                                                  GAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGTATTGGCTGGTTGTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCTTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACATGGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAATTTTCGATGTATTAACATGACTAAAGGGCTAGGGTCCGTCGTAGCAGAAGGCAATCATCACTTT                                                                                            >  SRR13385772.229393/1‑301 (MQ=60)
                                                                                                                                                                                            TACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATACTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGG                                                                                  >  SRR13385772.638327/1‑301 (MQ=60)
                                                                                                                                                                                               TTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTTTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTTACTCATTACGATTTTTCACTCATCTATGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCTGAAGGCAATCATCACTTTAAAACCTAGGCC                                                                                >  SRR13385772.757654/1‑300 (MQ=60)
                                                                                                                                                                                                 AGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACA                                                                             <  SRR13385772.898348/301‑1 (MQ=60)
                                                                                                                                                                                                                  TTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTG                                                            >  SRR13385772.562139/1‑301 (MQ=60)
                                                                                                                                                                                                                                GTCAGCATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTACATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTCGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTAACCTCCTCGAAGTATTGTTAAATTTCGATATATTAACATGAATAAAGGGCTATGGTCCGTCGTCGCAGAAGGACATCATCACTTTAAAACCGAGGCCACAATCGATACTTAGACATGATATCCTGATTGG                                               >  SRR13385772.1020403/1‑300 (MQ=60)
                                                                                                                                                                                                                                     AATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAA                                          >  SRR13385772.534068/1‑300 (MQ=60)
                                                                                                                                                                                                                                           AATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAG                                                                                                                                                                     >  SRR13385772.1225368/1‑171 (MQ=60)
                                                                                                                                                                                                                                                    GTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGCTAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGC                         >  SRR13385772.741536/1‑301 (MQ=60)
                                                                                                                                                                                                                                                     TTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCACTCGTTGAAGTAGATTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGACACAATCGATAATTAGCACTGATATTCTGATTGGACAAAAGGCAAAACATGACCGC                         >  SRR13385772.812778/1‑301 (MQ=60)
                                                                                                                                                                                                                                                        TCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAA                                                                                                                                   <  SRR13385772.973456/192‑1 (MQ=60)
                                                                                                                                                                                                                                                                             CCATTTATCAGCATGTTA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAATGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTAAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA  <  SRR13385772.268809/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                          TGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGAGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTA                                                                                                                                                                   >  SRR13385772.867644/1‑126 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                
CGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA  >  BK006939/337410‑337979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑