Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGT  >  BK006939/337520‑338040
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                    
ACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATAGACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGGTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTG                                                                                                                                                                                                                             <  SRR13385772.717302/301‑1 (MQ=60)
                                      TTTTTTTATTTAGTTATAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCACTTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCCCCCCCTTCCATTTATCCGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCCTTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAACATTCGATATATTACCATGACTAAAGGGCTATGG                                                                                                                                                                                       >  SRR13385772.903219/1‑301 (MQ=60)
                                         TTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTC                                                                                                                                                                                     <  SRR13385772.28675/300‑1 (MQ=60)
                                              TTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCACATTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGT                                                                                                                                                                               >  SRR13385772.955468/1‑301 (MQ=60)
                                                                    GAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGTATTGGCTGGTTGTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCTTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACATGGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAATTTTCGATGTATTAACATGACTAAAGGGCTAGGGTCCGTCGTAGCAGAAGGCAATCATCACTTT                                                                                                                                                         >  SRR13385772.229393/1‑301 (MQ=60)
                                                                              TACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATACTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGG                                                                                                                                               >  SRR13385772.638327/1‑301 (MQ=60)
                                                                                 TTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTTTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTTACTCATTACGATTTTTCACTCATCTATGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCTGAAGGCAATCATCACTTTAAAACCTAGGCC                                                                                                                                             >  SRR13385772.757654/1‑300 (MQ=60)
                                                                                   AGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACA                                                                                                                                          <  SRR13385772.898348/301‑1 (MQ=60)
                                                                                                    TTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTG                                                                                                                         >  SRR13385772.562139/1‑301 (MQ=60)
                                                                                                                  GTCAGCATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTACATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGCAGTCGTTTGTGGGAAAAGAAAAGTTGTTAAAGCCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTAACCTCCTCGAAGTATTGTTAAATTTCGATATATTAACATGAATAAAGGGCTATGGTCCGTCGTCGCAGAAGGACATCATCACTTTAAAACCGAGGCCACAATCGATACTTAGACATGATATCCTGATTGG                                                                                                            >  SRR13385772.1020403/1‑300 (MQ=60)
                                                                                                                       AATCCGAATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAA                                                                                                       >  SRR13385772.534068/1‑300 (MQ=60)
                                                                                                                             AATTGGCTGGTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAG                                                                                                                                                                                                                                  >  SRR13385772.1225368/1‑171 (MQ=60)
                                                                                                                                      GTTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑‑TTTTTTTTTCGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGCTAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGC                                                                                      >  SRR13385772.741536/1‑301 (MQ=60)
                                                                                                                                       TTTTCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCACTCGTTGAAGTAGATTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGACACAATCGATAATTAGCACTGATATTCTGATTGGACAAAAGGCAAAACATGACCGC                                                                                      >  SRR13385772.812778/1‑301 (MQ=60)
                                                                                                                                          TCTTTGTTTTACCACCCCCTTCCATTTATCAGCATGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAA                                                                                                                                                                                                <  SRR13385772.973456/192‑1 (MQ=60)
                                                                                                                                                               CCATTTATCAGCATGTTA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAATGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTAAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATA                                                               <  SRR13385772.268809/300‑1 (MQ=60)
                                                                                                                                                                            TGATA‑TTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGAGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTA                                                                                                                                                                                                                                >  SRR13385772.867644/1‑126 (MQ=60)
                                                                                                                                                                                                      TTTCAATCGTTGAAGTAGTTTGTGGGAAAAGAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGGGCTATGGTCCGTCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGAA                         >  SRR13385772.888861/1‑300 (MQ=60)
                                                                                                                                                                                                                            GGGGAAAAGAATAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACTATTTTTCACTCATCGAAGTATTGTTAAATTTCGATATATTAACATGACTAAAGTGCTATAGTCCGGCGTAGCAGAAGGCAATCATCACTTTAAATCCGAGGCCACAATAGATAATTAGCACTGATATGCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAAGTACATCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGT  <  SRR13385772.330354/301‑1 (MQ=60)
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                    
ACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTTTGTTTTACCATCCCCTTCCATTTATCAGCATGATATTTTTTTTTTTAGAATAATCCTTTCAATCGTTGAAGTAGTTTGTGGGAAAAAAAAAGTTGTTAAAGGCATTAACGTACACAGTGATTTGCTGACTCATTACGATTTTTCACTCATCGAAGTATTGTTAGATTTTGATATATTAACATGACTAAAGGGCTATGGTCCATCGTAGCAGAAGGCAATCATCACTTTAAAACCGAGGCCACAATCGATAATTAGCACTGATATTCTGATTGGAAAAAAGGCAAAAAATGACCGCTTCCATCAAAATTCAACCGGATATTGACTCTCTAAAGCAATTACAGCAGCAAAATGACGATAGTTCCATAAATATGTATCCCGT  >  BK006939/337520‑338040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑