Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTCGTTGGAGGAAGGTTACCAAGCTGCAGCACAAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACAGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAACGATATTAACAGAATTTGTGACCCATTAACAACAAGTGTCGATAAACTGTTAAC  >  BK006939/338496‑339060
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                               
CTTCGTTGGAGGAAGGTTACCAAGCTGCAGCACAAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTT                                                                                                                                                                                                                                                                          >  SRR13385771.346267/1‑301 (MQ=60)
  TCGTTGGCGGAAGGTTACCAAGCTGCAGCACAAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTT                                                                                                                                                                                                                                                                         <  SRR13385771.741570/300‑1 (MQ=60)
  TCGTTGGAGGAAGGTTACCAAGCTGCAGCACAACTAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTT                                                                                                                                                                                                                                                                        >  SRR13385771.1441441/1‑301 (MQ=60)
           GAAGGTTACCAAGCTGCAGCACAAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATT                                                                                                                                                                                                                                                               >  SRR13385771.1490551/1‑301 (MQ=60)
                                 AAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTGTTATATTGATTGTTTGGATTTCCAAATCATTGG                                                                                                                                                                                                                                         >  SRR13385771.1564735/1‑301 (MQ=60)
                                  AATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGT                                                                                                                                                                                                                                        >  SRR13385771.410853/1‑301 (MQ=60)
                                                     TCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGT                                                                                                                                                                                                                     >  SRR13385771.1445079/1‑301 (MQ=60)
                                                                   CGATTCCTCGCCAATACCATAGCCAGAACAACCTCCGATTAAAGTGAATCAAACGTTTGAATCGAATGTGGTCAAGGAAGGTTACGAAAAGCACGTCTCCACTTGGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATGTACAGACATTTACGGACTGTTAACCCATCTCCTTACCTGTTTGATATTGAGTGTTTGTAGTTCCAAAGCAGTGGGGCATCTCCAGAATTGTTGTGCAAATCTGATTCC                                                                                                                                                                                                       <  SRR13385771.1674240/301‑1 (MQ=60)
                                                                                                 ACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCT                                                                                                                                                                         <  SRR13385771.911389/301‑1 (MQ=60)
                                                                                                                      AACTATTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCT                                                                                                                                                    <  SRR13385771.1032589/301‑1 (MQ=60)
                                                                                                                            TGAATCGAATGTGGGCTAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTAC                                                                                                                                               <  SRR13385771.727153/300‑1 (MQ=60)
                                                                                                                                 CGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCACTATTTACAGACATTTACGTACTGTGAACCCATCTACTTACATGTTTTATATTGAGGGTTTGGATTTCCAAATCATTGGTGAATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATGTCTGGTACGGTCAAACGTGCGGCTACTACTGAAcg                                                                                                                                         >  SRR13385771.1808270/1‑299 (MQ=60)
                                                                                                                                             AGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATC                                                                                                                                                                                                                                                                                      <  SRR13385771.419822/148‑1 (MQ=60)
                                                                                                                                                              CACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGT                                                                                                             <  SRR13385771.833755/300‑1 (MQ=60)
                                                                                                                                                                      CACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCAAATTGCTGGTACTGTCAAACGTGGGGCTCATACTGAAGAGGATGATGATTTAGCGGACCAATTACGTGGCTCGTT                                                                                                     >  SRR13385771.26826/1‑300 (MQ=60)
                                                                                                                                                                       ACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAA                                                                                                   <  SRR13385771.1801983/301‑1 (MQ=60)
                                                                                                                                                                             AAGAAGCATATTAAGAAATGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACC                                                                                             <  SRR13385771.373047/301‑1 (MQ=60)
                                                                                                                                                                               GAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAACAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAACGACCGT                                                                                           >  SRR13385771.311270/1‑301 (MQ=60)
                                                                                                                                                                                          AGAAAGGTTATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATAGTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGT                                                                                <  SRR13385771.913401/301‑1 (MQ=60)
                                                                                                                                                                                            AAAGGTGAGATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCTAACTTCGTTACATCCTTTCAATATTTACAGACATTTACTTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTTCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTA                                                                              <  SRR13385771.1360029/301‑1 (MQ=60)
                                                                                                                                                                                                           CAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCAAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAG                                                               <  SRR13385771.1623476/301‑1 (MQ=60)
                                                                                                                                                                                                            AAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGCAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGC                                                              >  SRR13385771.1062013/1‑301 (MQ=60)
                                                                                                                                                                                                                   GCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAAGCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCAGTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGAGGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAAC                                                       <  SRR13385771.1893294/301‑1 (MQ=60)
                                                                                                                                                                                                                                      AGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAACGATATTAACAGAATTTGTG                                    <  SRR13385771.1405590/301‑1 (MQ=60)
                                                                                                                                                                                                                                                     CATCCTTTCAATATTTACAGCCATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATCTTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATAGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTAAACCGTGGGGCTACTACTGAAGAGGATGCTGCTTTAGCGGACCAATTACGTGGCTCGTTCAACGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCCAGAAACGATATTAACAGAATTTGTGACCCATTAACAACA                      >  SRR13385771.1178236/1‑300 (MQ=60)
                                                                                                                                                                                                                                                              AATATTTACAGACATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATTCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTTGTAGATTTA                                                                >  SRR13385771.842071/1‑249 (MQ=60)
                                                                                                                                                                                                                                                                        GAGATTTACGTACTGTGAACCCATCTCCTTACCTGTTTTATATTGAGTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAACGATATTAACAGAATTTGTGACCCATTAACAACAAGTGTCGATAAACTGTTAAC  <  SRR13385771.1888754/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                    CTGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTGAGCGTACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAACGATATTAACAGAATTTTTGACCCATTAACAACAAG                    <  SRR13385771.1586951/271‑1 (MQ=60)
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                               
CTTCGTTGGAGGAAGGTTACCAAGCTGCAGCACAAATAATCACTGATATCGTATCAAAGCTAACCGACGATTCCTCGCCAATACCATATCCAGAACAACCTCCTATTAAATTGAATCAAACTTTTGAATCGAATGTGGGCAAGGAAGGTTACGAAAATCACGTCTCCACTTTGAAGAAGCATATTAAGAAAGGTGATATTATTCAAGGTGTGCCATCGCAAAGAGTGGCAAGGCCAACTTCGTTACATCCTTTCAATATTTACAGACATTTACGTACAGTGAACCCATCTCCTTACCTGTTTTATATTGATTGTTTGGATTTCCAAATCATTGGTGCATCTCCAGAATTGTTGTGCAAATCGGATTCCAAAAATAGAGTCATTACCCATCCAATTGCTGGTACTGTCAAACGTGGGGCTACTACTGAAGAGGATGATGCTTTAGCGGACCAATTACGTGGCTCGTTAAAAGACCGTGCAGAACATGTTATGCTGGTAGATTTAGCAAGAAACGATATTAACAGAATTTGTGACCCATTAACAACAAGTGTCGATAAACTGTTAAC  >  BK006939/338496‑339060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑