Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCAAGAAGGAGTACACTACCTGTTAGGACGATGGAGGCCATATATGCCTACGAAGCACAGGGAGATGATGAGATTTCAATTGATCCGGGGGACATAATTACTGTTATCAGAGGCGATGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATTTCCTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACTATGGGCACATGGTGATATAAAAATGGCTTGGCAAGGTTTTATTTTGTTTAGACAAATGGAACAGTCTTC  >  BK006934/339794‑340387
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                           
CACCGAGAAGGAGTACACTACCTGTTAGGACGATGGATGCCATATATGCCTACGAAGCACAGGGAGATGATGAGATTTCAATTGAGCCTGGGGACATAATTACTGTTAGCAGAGGCGATGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATTTCCTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATAtagc                                                                                                                                                                                                                                                                                                         <  SRR13385772.82660/301‑5 (MQ=60)
                                 GGGAGGCCAGATATGCCTACGAAGCACAGGGAGATGATGAGATTTCAATTGATCCGGGGGACATAATTACTGTTATCAGAGGCGAGGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATGTCCTACAAGTGACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAA                                                                                                                                                                                                                                                                        <  SRR13385772.1192815/301‑1 (MQ=60)
                                                          gcagtGAGATGATGAGATTTCAATTGATCCGTGGGACATGATTACTGTTATCAGAGGCGATGACGGGAGCGGTGGGACATATGGTGAATGTGACGGATTTAAAGGTCTATTTCCTACAAGTGACTGTATATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGTCCGCCACTTTTTTTAGAGGTATGACGACTCTATGTTATATATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCC                                                                                                                                                                                                                                                 <  SRR13385772.905218/296‑1 (MQ=60)
                                                                   TGATGAGATTTCAATTGATCCGGGGGACATAATTACTGTTATCAGAGGCGATGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATTTCCTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATTACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATATCGCACAAAATCACATGTGCACAATCTACTATGCGAACACCTAAATTTATATCTAGTTCCATTTCTATATC                                                                                                                                                                                                                                      >  SRR13385772.698281/1‑301 (MQ=60)
                                                                        AGATTTCAATTGATCCGGGGGACATAATTACTGTTATCAGAGGCGATGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATTTCCTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑TCACAAATTTTCGTGTTATCAGTCTACTATGCAAACACATATATTTTTATTTATTTCCATCTCTATCTCCCTTT                                                                                                                                                                                                                                 >  SRR13385772.242575/1‑301 (MQ=60)
                                                                                                                              GCGGGTGGAGATATGGTGAATGTGACGGATAGAAAGATCTATTTCTTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAAGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATT                                                                                                                                                                           <  SRR13385772.274473/301‑1 (MQ=60)
                                                                                                                                                              AAAGGTCTATTTCCTACAAGGTACTGTAAATGAACGAATGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTA                                                                                                                                           <  SRR13385772.643194/301‑1 (MQ=60)
                                                                                                                                                                                AGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCTTGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCCCATCTTCGTCCTCTTTTTCTAATTCGGATTCAGATTCGGATTCCAAGGTACTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGCAT                                                                                                                         >  SRR13385772.994910/1‑301 (MQ=60)
                                                                                                                                                                                        TAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAACTCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAAT                                                                                                               >  SRR13385772.878214/1‑301 (MQ=60)
                                                                                                                                                                                         AAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAAT                                                                                                               <  SRR13385772.1202510/300‑1 (MQ=60)
                                                                                                                                                                                           ATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCAAAAAATTTCATGTGATAAATATACTAGGCGAAAACATAAATTGTTATTTATTTCCATGTATATATCTATTTATATGTCTGGCACATCTTCGTTCTCGTTTTCGAATTCGGCTACAGATTCGGATTCAAAGGTTGTCTCCAACTCACAGTTTGTTCTACAGTTAGGACACATGAATAGAGGATAATT                                                                                                              >  SRR13385772.1213580/1‑301 (MQ=60)
                                                                                                                                                                                             GAACGAAGTAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATA                                                                                                          <  SRR13385772.127086/301‑1 (MQ=60)
                                                                                                                                                                                                                             TTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGACTAGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGC                                                                            >  SRR13385772.1054510/1‑301 (MQ=60)
                                                                                                                                                                                                                                    gtctGCCACTTTTTTGAGAGTTATTACGACTCTATGTGA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACT                                                                       <  SRR13385772.363329/295‑1 (MQ=60)
                                                                                                                                                                                                                                     GCCGCCACTTTTTTGAGAGGTATGACGACTCTATGTTA‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACTATG                                                                    <  SRR13385772.1259833/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                              ATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACTATGGGCACATGGTGATATAAAAATGGCTTGGCAAGGTTTTAT                             <  SRR13385772.560170/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                         TATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACTATGGGCACATGGTGATATAAAAATGGCTTGGCAAGGTTTTATTTTGTTTAGACAAATGGAACAGTCTTC  >  SRR13385772.184338/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                           
CACCAAGAAGGAGTACACTACCTGTTAGGACGATGGAGGCCATATATGCCTACGAAGCACAGGGAGATGATGAGATTTCAATTGATCCGGGGGACATAATTACTGTTATCAGAGGCGATGACGGTAGCGGGTGGACATATGGTGAATGTGACGGATTGAAAGGTCTATTTCCTACAAGTTACTGTAAATGAACGAAGGAATGAACTGAAACTATTAAATATTTTCCCTGGCCGCCACTTTTTTGAGAGGTATGACGACTCTATGT‑‑‑‑TATATATATATATATATATATATATATATATA‑‑GCACAAAATTTCATGTGATCAATCTACTAGGCGAACACCTAAATTGTTATTTATTTCCATGTCTATATCCATTTCAATGTCTGGCTCATCTTCGTCCTCGTTTTCGAATTCGGATTCAGATTCGGATTCCAAGGTAGTCTCCAAATCACAGTTTGTCCTACAGTTCGGACACATGAATTGAGGATAATTCATAATAACCAATCTTCTTACACAATGAAAATGCCAACTATGGGCACATGGTGATATAAAAATGGCTTGGCAAGGTTTTATTTTGTTTAGACAAATGGAACAGTCTTC  >  BK006934/339794‑340387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑