Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATAAATGGCACTTTTCGCACACCCGTTGTTTTATCTCCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCG  >  BK006945/341629‑342202
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                    
GATAAATGGCACTTTTCGCACACCCGTTGTTTTATCTCCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGA                                                                                                                                                                                                                                                                                   <  SRR13385772.1058423/301‑1 (MQ=60)
                CGCACACCCGTTGTTTTATCTCCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATGGTGGGGACTTCGAGAACGCTTCCTCGAGGGC                                                                                                                                                                                                                                                                   >  SRR13385772.394447/1‑301 (MQ=60)
                    CACCCGTTGTTTTATCTCCGATAGTACGTGGGAATTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGAACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGG                                                                                                                                                                                                                                                                >  SRR13385772.954880/1‑300 (MQ=60)
                                TATCTCCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACC                                                                                                                                                                                                                                                    >  SRR13385772.937696/1‑300 (MQ=60)
                                     CCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATT                                                                                                                                                                                                                                               >  SRR13385772.930289/1‑300 (MQ=60)
                                         TAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAAAGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAA                                                                                                                                                                                                                                             >  SRR13385772.118721/1‑298 (MQ=60)
                                          AGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACAGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGAT                                                                                                                                                                                                                                         <  SRR13385772.567194/301‑1 (MQ=60)
                                                                        ACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGAT                                                                                                                                                                                                           >  SRR13385772.975319/1‑301 (MQ=60)
                                                                               AACGGCATCTTGAATTGAGCAGGTAGTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCGCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAA                                                                                                                                                                                                    <  SRR13385772.334820/301‑1 (MQ=60)
                                                                                         TGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTTGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTG                                                                                                                                                                                           <  SRR13385772.117496/300‑1 (MQ=60)
                                                                                            ATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTA                                                                                                                                                                                       <  SRR13385772.902612/301‑1 (MQ=60)
                                                                                                       ATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGG                                                                                                                                                                            >  SRR13385772.846649/1‑301 (MQ=60)
                                                                                                       ATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTG                                                                                                                                                                             <  SRR13385772.1169785/300‑1 (MQ=60)
                                                                                                                           AACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACCGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGCGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAccatgacaagg                                                                                                                                                        >  SRR13385772.547665/1‑290 (MQ=60)
                                                                                                                                             GTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTAC                                                                                                                                      <  SRR13385772.297292/301‑1 (MQ=60)
                                                                                                                                                  AAAAAAGTAGCAAAGAGAAAAAGGAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACAT                                                                                                                                 <  SRR13385772.231803/301‑1 (MQ=60)
                                                                                                                                                   AAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATC                                                                                                                                >  SRR13385772.628587/1‑301 (MQ=60)
                                                                                                                                                                   AAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTAT                                                                                                                                                                                      <  SRR13385772.726892/231‑1 (MQ=60)
                                                                                                                                                                               GATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTTTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACGTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCATATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTGGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATAAACAAAAAGTACAGGGCGATAAACTACC                                                                                                    <  SRR13385772.604341/301‑1 (MQ=60)
                                                                                                                                                                                      TGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGCACATTGTGTTCCGTCTGATTGACACTGAGGACACCAATGTAAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCCTATTACGACATCACCACACAGTCCAGGGCGATACACTACCTTTTCGT                                                                                             >  SRR13385772.862970/1‑301 (MQ=60)
                                                                                                                                                                                             GAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGG                                                                                                                <  SRR13385772.436150/275‑1 (MQ=60)
                                                                                                                                                                                                  TAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGC                                                                                  >  SRR13385772.681041/1‑300 (MQ=60)
                                                                                                                                                                                                   AGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAA                                                                                <  SRR13385772.902607/301‑1 (MQ=60)
                                                                                                                                                                                                                      AATAGTAATGTTGGTCTGAACATTGTGTTCAGTCTGATTGAAACTGAGGACACCAATGTCAGATTGAACATTGTGGTGAATTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATA                                                              <  SRR13385772.2184/300‑1 (MQ=60)
                                                                                                                                                                                                                                       GAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGCCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGAATCGGAGCGGTC                                            >  SRR13385772.1276310/1‑301 (MQ=60)
                                                                                                                                                                                                                                                 TTCCTTCTGAGGGAAACTGAGTTCACCAATGTCAGATTGACCAGTGTGGGGACTTCGAGAACGCTTCTTCGATTGCTGGAGGTGATTAACCATATTAAATATTTCTACAACAAATCAGGCCGTGTAGATGATTTGGAAATAGACTTTGATTATCTGGTGGTTGACTTCACCAACATGGTGATGGTCTGGAACGCATATTACGACATCAACAAGAAGTACAGGGCGATAAACGACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTT                                   <  SRR13385772.1276244/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                              TGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGA                                                                                                                                    <  SRR13385772.233839/174‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 CAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTAACCAATCCATTGGAGGCGGTGACAAATCCG  <  SRR13385772.259038/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                              GTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGG                                                                              >  SRR13385772.40280/1‑212 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                    
GATAAATGGCACTTTTCGCACACCCGTTGTTTTATCTCCGATAGTACGTGGGCCTTTATTTATGGTCGTTTAACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCG  >  BK006945/341629‑342202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑