Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCT  >  BK006945/341701‑342252
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                      
ACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGAT                                                                                                                                                                                                                                                             >  SRR13385772.975319/1‑301 (MQ=60)
       AACGGCATCTTGAATTGAGCAGGTAGTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCGCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAA                                                                                                                                                                                                                                                      <  SRR13385772.334820/301‑1 (MQ=60)
                 TGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTTGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTG                                                                                                                                                                                                                                             <  SRR13385772.117496/300‑1 (MQ=60)
                    ATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTA                                                                                                                                                                                                                                         <  SRR13385772.902612/301‑1 (MQ=60)
                               ATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGG                                                                                                                                                                                                                              >  SRR13385772.846649/1‑301 (MQ=60)
                               ATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTG                                                                                                                                                                                                                               <  SRR13385772.1169785/300‑1 (MQ=60)
                                                   AACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACCGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGCGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAccatgacaagg                                                                                                                                                                                                          >  SRR13385772.547665/1‑290 (MQ=60)
                                                                     GTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTAC                                                                                                                                                                                        <  SRR13385772.297292/301‑1 (MQ=60)
                                                                          AAAAAAGTAGCAAAGAGAAAAAGGAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACAT                                                                                                                                                                                   <  SRR13385772.231803/301‑1 (MQ=60)
                                                                           AAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATC                                                                                                                                                                                  >  SRR13385772.628587/1‑301 (MQ=60)
                                                                                           AAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTAT                                                                                                                                                                                                                                        <  SRR13385772.726892/231‑1 (MQ=60)
                                                                                                       GATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTTTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACGTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCATATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTGGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATAAACAAAAAGTACAGGGCGATAAACTACC                                                                                                                                                      <  SRR13385772.604341/301‑1 (MQ=60)
                                                                                                              TGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGCACATTGTGTTCCGTCTGATTGACACTGAGGACACCAATGTAAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCCTATTACGACATCACCACACAGTCCAGGGCGATACACTACCTTTTCGT                                                                                                                                               >  SRR13385772.862970/1‑301 (MQ=60)
                                                                                                                     GAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGG                                                                                                                                                                  <  SRR13385772.436150/275‑1 (MQ=60)
                                                                                                                          TAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGC                                                                                                                                    >  SRR13385772.681041/1‑300 (MQ=60)
                                                                                                                           AGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAA                                                                                                                                  <  SRR13385772.902607/301‑1 (MQ=60)
                                                                                                                                              AATAGTAATGTTGGTCTGAACATTGTGTTCAGTCTGATTGAAACTGAGGACACCAATGTCAGATTGAACATTGTGGTGAATTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATA                                                                                                                <  SRR13385772.2184/300‑1 (MQ=60)
                                                                                                                                                               GAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGCCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGAATCGGAGCGGTC                                                                                              >  SRR13385772.1276310/1‑301 (MQ=60)
                                                                                                                                                                         TTCCTTCTGAGGGAAACTGAGTTCACCAATGTCAGATTGACCAGTGTGGGGACTTCGAGAACGCTTCTTCGATTGCTGGAGGTGATTAACCATATTAAATATTTCTACAACAAATCAGGCCGTGTAGATGATTTGGAAATAGACTTTGATTATCTGGTGGTTGACTTCACCAACATGGTGATGGTCTGGAACGCATATTACGACATCAACAAGAAGTACAGGGCGATAAACGACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTT                                                                                     <  SRR13385772.1276244/300‑1 (MQ=60)
                                                                                                                                                                                                      TGTCAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGA                                                                                                                                                                                      <  SRR13385772.233839/174‑1 (MQ=60)
                                                                                                                                                                                                         CAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTAACCAATCCATTGGAGGCGGTGACAAATCCG                                                    <  SRR13385772.259038/301‑1 (MQ=60)
                                                                                                                                                                                                                      GTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGG                                                                                                                                >  SRR13385772.40280/1‑212 (MQ=60)
                                                                                                                                                                                                                                  AGAGCGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCGGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTGTGACGGTATAGATTGGATAGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCG                           <  SRR13385772.177890/301‑1 (MQ=60)
                                                                                                                                                                                                                                  AGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACACATCAGGCCGTGTAGAGGATTTGGCAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTAACGGAGGTTTTCACCAATCCATTGAAGGCGGTGACAACTCCGACATCCAAGATCCCACCGGTGGGCG                           >  SRR13385772.751179/1‑301 (MQ=60)
                                                                                                                                                                                                                                        ATTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAATATTTCTACAACAAATCAGGACGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTTAAGGAGGTTTTCACCAATCAATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGCGGGCGACAAGG                     >  SRR13385772.589436/1‑301 (MQ=60)
                                                                                                                                                                                                                                           CCTCGAGTGCAGGAGGTGATTAACCAGATGAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCT                   <  SRR13385772.1246598/300‑1 (MQ=60)
                                                                                                                                                                                                                                                  TGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACACGATACACCTGGTGGGCGTCAAGTCTAAAGATG            >  SRR13385772.868005/1‑300 (MQ=60)
                                                                                                                                                                                                                                                           TGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCACGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACCGGTGGACGTCAAGTCTAAAGATGACATGGGGCT  >  SRR13385772.903373/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                TCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTA                                                                                                                  <  SRR13385772.1059848/168‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                      
ACGAAAGAACGGCATCTTGAATTGAGCAGGTATTTAAAAGATAGGACGAGAAACAAGCACATGATCTGTGTCGAAAAAAAGTAGCAAAGAGAAAAAGTAGGAGGATAGGATGAACAGGAAAGTAGCTATCGTAACGGGTACTAATAGTAATCTTGGTCTGAACATTGTGTTCCGTCTGATTGAAACTGAGGACACCAATGTCAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCT  >  BK006945/341701‑342252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑