Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGAACTACTAAAGACAAATGCCTCTTATGAGGGCTCCAAGCGTTTAGTTGATTTACTGCATTTGGCCACCTACAAAGACTTGAAAAA  >  BK006945/341902‑342474
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                            
CAGATTGACCATTGTGGTGACTTCGAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTAACCAATCCATTGGAGGCGGTGACAAATCCG                                                                                                                                                                                                                                                                                  <  SRR13385772.259038/301‑1 (MQ=60)
                         AGAGCGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCGGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTGTGACGGTATAGATTGGATAGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCG                                                                                                                                                                                                                                                         <  SRR13385772.177890/301‑1 (MQ=60)
                         AGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACACATCAGGCCGTGTAGAGGATTTGGCAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTAACGGAGGTTTTCACCAATCCATTGAAGGCGGTGACAACTCCGACATCCAAGATCCCACCGGTGGGCG                                                                                                                                                                                                                                                         >  SRR13385772.751179/1‑301 (MQ=60)
                               ATTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAATATTTCTACAACAAATCAGGACGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTTAAGGAGGTTTTCACCAATCAATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGCGGGCGACAAGG                                                                                                                                                                                                                                                   >  SRR13385772.589436/1‑301 (MQ=60)
                                  CCTCGAGTGCAGGAGGTGATTAACCAGATGAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCT                                                                                                                                                                                                                                                 <  SRR13385772.1246598/300‑1 (MQ=60)
                                         TGCAGGAGGTGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACACGATACACCTGGTGGGCGTCAAGTCTAAAGATG                                                                                                                                                                                                                                          >  SRR13385772.868005/1‑300 (MQ=60)
                                                  TGATTAACCAGATTAAAGATTTCTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCACGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACCGGTGGACGTCAAGTCTAAAGATGACATGGGGCT                                                                                                                                                                                                                                >  SRR13385772.903373/1‑301 (MQ=60)
                                                     ataaccaaattacagatctcTACAACAAATCAGGCCGTGTAGAGGATTTGGAAAAAGACTTTGATTATCTGTTGGTGGACATCACCAACATGGTGAATGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAAGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTAT                                                                                                                                                                                                                             <  SRR13385772.535390/281‑1 (MQ=60)
                                                                      ttcgACAACAAATAAGGCCTTGTAGAGGATTTGGAAATAGACTTTGATTATCGGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTG                                                                                                                                                                                                             <  SRR13385772.787338/296‑1 (MQ=60)
                                                                                                GGATTTGGAAATAGACTTTGATTATCTGTTGGTGCACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGGGTTTGGTCCGTACTACTTTATCAGTAA                                                                                                                                                                                   >  SRR13385772.815236/1‑300 (MQ=60)
                                                                                                     TGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCT                                                                                                                                                                             >  SRR13385772.877018/1‑301 (MQ=60)
                                                                                                     TGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTC                                                                                                                                                                              <  SRR13385772.17257/300‑1 (MQ=60)
                                                                                                                                TGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTT                                                                                                                                                   >  SRR13385772.1042678/1‑300 (MQ=60)
                                                                                                                                   ACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATAT                                                                                                                                               <  SRR13385772.594839/301‑1 (MQ=60)
                                                                                                                                    CTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTCTTCACCAATCCATTGGAGGCGGTGACACATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGCAGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAACGGCTTATATT                                                                                                                                              >  SRR13385772.553310/1‑301 (MQ=60)
                                                                                                                                          CAACATGGTTAGTGTCTTGAACGGATATTACGACATCAACGAAAAGTACAGGGCTATAAACTACCTTTGCGTGAATGCTGCGCAATGTATCTTTGACGGTATAGATTGGTTCGGAGCGGTCAAGGAGGTTTTCACCAATCCAGTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGG                                                                                                                                        <  SRR13385772.901894/301‑1 (MQ=60)
                                                                                                                                                                      TACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGAGTCAAGTCTAAAGATGACATGGGGCTTATTTTACAGGCAAATGTGTTTGGTCCGTACTACTTTATAAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGATTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTACGT                                                                                                            >  SRR13385772.1049738/1‑301 (MQ=60)
                                                                                                                                                                      GACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGGGAATGCTGCGCAAGGTATCTTGGACGGTATAGAGTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGT                                                                                                            <  SRR13385772.835044/301‑1 (MQ=60)
                                                                                                                                                                           CATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCCGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTT                                                                                                       >  SRR13385772.1000662/1‑301 (MQ=60)
                                                                                                                                                                                    AAAGTACAGGGCGATAAACTACCTTTTCGTTAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAAC                                                                                              <  SRR13385772.1259462/301‑1 (MQ=60)
                                                                                                                                                                                                             TTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGATTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTATGCCTCCATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCATAAGTATATTTCGTTGAACGATATTGAACTACTAAAGACAAATG                                                                     >  SRR13385772.800301/1‑301 (MQ=60)
                                                                                                                                                                                                              TCGTGGATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAGATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGAACTACTAAAGACAAATG                                                                     <  SRR13385772.30552/300‑1 (MQ=60)
                                                                                                                                                                                                                   AATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGCACTACTAAAGACAAATGCatatt                                                               >  SRR13385772.709066/1‑296 (MQ=60)
                                                                                                                                                                                                                               GGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGCAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAAAGATATTGAACTACTAACGACAAATGCCTCTTATGATGGATCC                                                    >  SRR13385772.950196/1‑300 (MQ=60)
                                                                                                                                                                                                                                        GACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCAGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGCTGACATAGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTAATACTTTCTAAGTAAAATTCTGCCTCAATTGACAAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTTCACTACTAAAGACAAATACCAACTATGAGGGCTCCAAGCcctta                                           >  SRR13385772.864678/1‑295 (MQ=60)
                                                                                                                                                                                                                                                   TTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATCCAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGACAATGTGTTTGGTCCGTACTACTTTATCCGTACAATTCTGCCTCACTTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTCAGTATCTTTCGTTGCACGATCTTGAACTACTACAGACAAATGCCTCC                                                                >  SRR13385772.440584/1‑268 (MQ=60)
                                                                                                                                                                                                                                                                             TCACCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGCCCAGGGGAAAGGCCTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGACCGATATTGAACTACTAAAGACAAATGCCCCTTATGAGGGCCCCAAGCGTTTAGTGGATTTACTGCATTTGGCAACCTACAAAGACTTGA      >  SRR13385772.1227379/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                               ACCAATCCATTGGAGGCGGTGACAAATCCGACATACAGGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGAACTACTAAAGACAAATGCCTCTTATGAGGGATCCAAGCGTTTAGTTGATTTACTGCATTTGGCCACCTACAAAGACTTGAAAA   <  SRR13385772.494942/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                CCAATCCATTGGAGGCGGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGAACTACTAAAGACAAATGCCTCTTATGAGGGCTCCAAGCGTTTAGTTGATTTACTGCATTTGTCCACCTACAAAGACTTGAAAAA  <  SRR13385772.1185887/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                            
CAGATTGACCATTGTGGTGACTTCTAGAACGCTTCCTCGAGTGCAGGAGGTGATTAACCAGATTAAAGATTTTTACAACAAATCAGGCCGTGTAGAGGATTTGGAAATAGACTTTGATTATCTGTTGGTGGACTTCACCAACATGGTGAGTGTCTTGAACGCATATTACGACATCAACAAAAAGTACAGGGCGATAAACTACCTTTTCGTGAATGCTGCGCAAGGTATCTTTGACGGTATAGATTGGATCGGAGCGGTCAAGGAGGTTTTCACCAATCCATTGGAGGCAGTGACAAATCCGACATACAAGATACAACTGGTGGGCGTCAAGTCTAAAGATGACATGGGGCTTATTTTCCAGGCCAATGTGTTTGGTCCGTACTACTTTATCAGTAAAATTCTGCCTCAATTGACCAGGGGAAAGGCTTATATTGTTTGGATTTCGAGTATTATGTCCGATCCTAAGTATCTTTCGTTGAACGATATTGAACTACTAAAGACAAATGCCTCTTATGAGGGCTCCAAGCGTTTAGTTGATTTACTGCATTTGGCCACCTACAAAGACTTGAAAAA  >  BK006945/341902‑342474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑