Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCTTTTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGCGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACCTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGC  >  BK006942/327036‑327602
                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                          
TCTTTTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTG                                                                                                                                                                                                                                                                            >  SRR13385771.953050/1‑301 (MQ=60)
          AGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACA                                                                                                                                                                                                                                                                   >  SRR13385771.1063813/1‑300 (MQ=60)
                         CCACTTTGTTAAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTCCAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGACAACGAGCCAACTTTCCAATACTGCCTCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGACCGCAGATTTCTTGGAAGCAGGTTAGTTTTTGATTCGTCATTAACGTTTTCTTCCGAAACTTCCGAAGAAGCATCTGTGTATTCCAATTTTTTCAAAAAATT                                                                                                                                                                                                                                                   >  SRR13385771.973657/1‑301 (MQ=60)
                            CTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACG                                                                                                                                                                                                                                                >  SRR13385771.1049777/1‑301 (MQ=60)
                               TGTTCAACACATTTGAAGAATACATTGTGTTGGATGCAGACTTAGTACCGGTTGGAGTGTCTGATTTCTTTTTCGACTCTCCTTCTGACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCATATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCTTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGAC                                                                                                                                                                                                                                              <  SRR13385771.1254230/300‑1 (MQ=60)
                                    AACACATTTGAAGAATACATTTTGTTGGATGAAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATC                                                                                                                                                                                                                                        >  SRR13385771.70536/1‑301 (MQ=60)
                                         ATTTGAAGTATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTGTTCGACGCTCCTTCTTACAGGGAGAGAGTGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTT                                                                                                                                                                                                                                   <  SRR13385771.443254/301‑1 (MQ=60)
                                                       TTTTGTTGGATGCAGACGTAGTACCGTTTGTCGGGTCTGATTACTTTTTCGACTCTCCTTATTACAGGGAGAGCGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAAAGTTAAATGAAGTGGAACCATCTGCACAAGAACGCAGATTTACAGGAAGTAGGTTAGCTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTCCAATTTTTTCAAAAAATAACGACTCCAACATGCTGATAGAGGTTTGAT                                                                                                                                                                                                                     >  SRR13385771.596507/1‑301 (MQ=60)
                                                                                   TGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAA                                                                                                                                                                                          <  SRR13385771.356461/300‑1 (MQ=60)
                                                                                                           CTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCTATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTT                                                                                                                                                                  >  SRR13385771.782518/1‑300 (MQ=60)
                                                                                                                     TACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGATCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGTAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATGCGTCATGACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATGTGGAT                                                                                                                                                        <  SRR13385771.590497/300‑1 (MQ=60)
                                                                                                                     TACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGAT                                                                                                                                                        <  SRR13385771.253559/300‑1 (MQ=60)
                                                                                                                             GAGAGGGATACTTTTGGTCAAGGATAGTGTGATGGAAAACTAGCAAACTTTCCAATACTGCATCGAAATGTTAAAGGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTG                                                                                                                                               <  SRR13385771.229567/301‑1 (MQ=60)
                                                                                                                                                    ATAGGGTTATGGAAAACGAGCAAGCTTTCCAATACTGCATCGAAATGTTACATGAAGTGGAACCCTCTGCAAAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGAATCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAA                                                                                                                        <  SRR13385771.1159926/301‑1 (MQ=60)
                                                                                                                                                                  AACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGT                                                                                                          >  SRR13385771.387969/1‑301 (MQ=60)
                                                                                                                                                                   ACGAGCAAACTTTCCAATACTGCATCGACATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATATGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGCGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAACATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTT                                                                                                         >  SRR13385771.974013/1‑301 (MQ=60)
                                                                                                                                                                                             GAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGAATCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGCGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTCTGGTGACAAGGAAATATTCTGGTTGGGGCACTTATATGCTGGCCAGGATT                                                                               >  SRR13385771.1540784/1‑301 (MQ=60)
                                                                                                                                                                                                ATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATT                                                                            <  SRR13385771.901828/301‑1 (MQ=60)
                                                                                                                                                                                                                   CCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGCTTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGG                                                         <  SRR13385771.316515/301‑1 (MQ=60)
                                                                                                                                                                                                                        GCACAAGAACGCAGATTTATTGGAAGGAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAAGAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTA                                                    <  SRR13385771.1601320/301‑1 (MQ=60)
                                                                                                                                                                                                                                                          TTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAAT                                                                                                                                                              <  SRR13385771.180075/161‑1 (MQ=60)
                                                                                                                                                                                                                                                                   CGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGAC          >  SRR13385771.785022/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                   CGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGAC          <  SRR13385771.1524318/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                    GTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACAT        >  SRR13385771.1663414/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                          ACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGC  <  SRR13385771.1564515/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                          
TCTTTTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGCGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACCTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGC  >  BK006942/327036‑327602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑