Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATTTCTTTTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGCGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACCTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGCGGGATGT  >  BK006942/327032‑327609
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                 
CATTTCGGTTTTTCAGAATAAATGGGTCGCCACGTTGTTCAACACATTTGAAGAAGACATTTTGGTGGATGCAGACGGAGTACCGTTTGTAGGGTCTGAGTACTTTGTCGACTCTCCTTCTTACAGGGAGAGAGGGATACGTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGAGTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCA                                                                                                                                                                                                                                                                                       <  SRR13385772.1050441/301‑1 (MQ=60)
        TTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGCGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGACCGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGT                                                                                                                                                                                                                                                                                >  SRR13385772.1024207/1‑300 (MQ=60)
           TTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCCGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATT                                                                                                                                                                                                                                                                             <  SRR13385772.906205/300‑1 (MQ=60)
              AGAATAACTGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCCTCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAA                                                                                                                                                                                                                                                                         <  SRR13385772.395025/301‑1 (MQ=60)
                       GGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGTTGCAGACGTAGTACCGTTTGTAGGGTCTGATGACTTTTTCGACTCTCCTTCGTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGTAACCCTCTGCACAATAACGCAGATTTATTGGAAGGAGGTTAGTTTTTGAGTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAA                                                                                                                                                                                                                                                                <  SRR13385772.20486/301‑1 (MQ=60)
                         GTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGAATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAA                                                                                                                                                                                                                                                              <  SRR13385772.1298410/301‑1 (MQ=60)
                           CGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAA                                                                                                                                                                                                                                                             <  SRR13385772.12452/300‑1 (MQ=60)
                                   TGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAAACCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACT                                                                                                                                                                                                                                                    >  SRR13385772.726743/1‑301 (MQ=60)
                                                        ACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTT                                                                                                                                                                                                                                <  SRR13385772.528646/300‑1 (MQ=60)
                                                            TTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTT                                                                                                                                                                                                                           >  SRR13385772.788646/1‑301 (MQ=60)
                                                                           CGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTT                                                                                                                                                                                                            >  SRR13385772.949523/1‑301 (MQ=60)
                                                                                          GGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGA                                                                                                                                                                                             <  SRR13385772.309408/301‑1 (MQ=60)
                                                                                           GGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGAT                                                                                                                                                                                            >  SRR13385772.1128810/1‑301 (MQ=60)
                                                                                                                       CTTACAGGGAGAGAGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCTGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGG                                                                                                                                                                 >  SRR13385772.1092509/1‑300 (MQ=60)
                                                                                                                                            TTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTTAGACATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGT                                                                                                                                           >  SRR13385772.513499/1‑301 (MQ=60)
                                                                                                                                                          AGTGTTATGGAAAACGAGCAAACTTTCCAATACTGCAGCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGAGTTATTGGAAGTAGGGTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAA                                                                                                                                                                                                                                                                                          <  SRR13385772.767135/144‑1 (MQ=60)
                                                                                                                                                                           ACAAACTTTCAAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGACGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAAGATTCTGGTTGGGG                                                                                                            <  SRR13385772.529798/301‑1 (MQ=60)
                                                                                                                                                                                 TTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGACGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTACATTTGGATGGCAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTT                                                                                                      >  SRR13385772.1239846/1‑301 (MQ=60)
                                                                                                                                                                                    CCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATAT                                                                                                   <  SRR13385772.1256885/301‑1 (MQ=60)
                                                                                                                                                                                                               AGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCGTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCC                                                                        <  SRR13385772.490075/301‑1 (MQ=60)
                                                                                                                                                                                                                                 AGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCAGGCCAGGATTATTCTATCACTCCCGTTGATGGCAGTATTATT                                                      >  SRR13385772.850876/1‑301 (MQ=60)
                                                                                                                                                                                                                                      GCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTT                                                                                                                <  SRR13385772.496773/238‑1 (MQ=60)
                                                                                                                                                                                                                                        AGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACTTCAGAAGAAGCATCTGTGTATTACAAGTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATA                                                                                                                        <  SRR13385772.459054/228‑1 (MQ=60)
                                                                                                                                                                                                                                                                                        TCCGAAACTTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGCGGGATGT  <  SRR13385772.610191/298‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                 
CATTTCTTTTTTTCAGAATAAATGGGTCGCCACTTTGTTCAACACATTTGAAGAATACATTTTGTTGGATGCAGACGTAGTACCGTTTGTAGGGTCTGATTACTTTTTCGACTCTCCTTCTTACAGGGAGAGCGGGATACTTTTGTTCAAGGATAGGGTTATGGAAAACGAGCAAACTTTCCAATACTGCATCGAAATGTTAAATGAAGTGGAACCCTCTGCACAAGAACGCAGATTTATTGGAAGTAGGTTAGTTTTTGATTCGTCATTACCGTTTTCTTCCGAAACCTCAGAAGAAGCATCTGTGTATTACAATTTTTTCAAAAAATTACGACTCCATCATGTTGATAGTGGTTTGGTTGTAGTCAATAAACTTGAGAAATTAAATGGATTGTTGATGTCTTTTATGTTAAATTTGGATGGAAAATTGCAGAGGTGTGTGTATGGTGACAAGGAAATATTCTGGTTGGGGCAATTATATGCTGGCCAGGATTATTCTATCAATCCCGTTGATGGCAGTATTATTGGACCTGTTAATGAAGAGCCTGAAAATGATGACGGACATAAAAGCGGGATGT  >  BK006942/327032‑327609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑