Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACTAATCGTTCCTGACGTTTCTGTTCATCCATGGATGCAAATCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTG  >  BK006942/327806‑328392

ACTAATCGTTCCTGACGTTTCTGTTCATCCATGGATGCAAATCAAGGAATGTTCTAATTATATGTATTGTGCAGATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACTATATATTAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAAAT                                                                                                                                                                                                                                                                                                <  SRR13385771.662438/301‑1 (MQ=60)

             GACGTTTCTGTTCATCCATGGATGCAAATCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGAATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGCTTTGGGAA‑TAAAATTAACAATTATTT                                                                                                                                                                                                                                                                                     >  SRR13385771.1693593/1‑300 (MQ=60)

                   TCTGTTCATCCATGGATGCAAATCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGC                                                                                                                                                                                                                                                                               <  SRR13385771.1253091/300‑1 (MQ=60)

                                      AAATCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TCAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGG                                                                                                                                                                                                                                                            >  SRR13385771.1588682/1‑300 (MQ=60)

                                         TCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTATCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCAGACAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TCAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAAC                                                                                                                                                                                                                                                         >  SRR13385771.1440741/1‑300 (MQ=60)

                                               TATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGAAGGACACACAAACGCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATAAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAAC                                                                                                                                                                                                                                                   <  SRR13385771.1897704/300‑1 (MQ=60)

                                                        ATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATA                                                                                                                                                                                                                                          >  SRR13385771.786485/1‑300 (MQ=60)

                                                        ATTATATGTATTGTGCATAGGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGAGATAGCAATGATATTTCTCGAACCTGGAATGCTAATGGAG‑AAAAAAAAAAGGGAAAAGGAAATGAGAGTATTAATATGTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAGA‑AAATTAACAATTAGTTTAAAGCAGAAGTCAGCCGGATGAGGAACAAGAACTGTTGAATAG                                                                                                                                                                                                                                         <  SRR13385771.1502008/301‑1 (MQ=60)

                                                            TATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTTAACTTGACGAAGGTCTTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTA                                                                                                                                                                                                                                                                                   <  SRR13385771.478469/256‑1 (MQ=60)

                                                             ATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATT                                                                                                                                                                                                                                     <  SRR13385771.754462/300‑1 (MQ=60)

                                                              TGTATTGTGCATATGCTACGGGTGAAGGACACAAAAAATCTGAACTTGACGAAGGTCGTCTAATCAAGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAAACTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAAAGTATTAATATTTATTAAGTATGGAGCATATATAATACGCAAAATGATTATAGATTAATATAGAATATGATTTAGGAA‑TAAAATTAACAATTAGTTTAAAGCAGACGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATT                                                                                                                                                                                                                                     >  SRR13385771.989970/1‑299 (MQ=60)

                                                                         TATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGA                                                                                                                                                                                                                         >  SRR13385771.659322/1‑300 (MQ=60)

                                                                              TACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTT                                                                                                                                                                                                                   >  SRR13385771.1348014/1‑301 (MQ=60)

                                                                                       CAGACACACAAACGCTTAACTTGGCGAAGGTCGTCTAAACACGTTTACTGAAAAGGAATTACGGTATATCCATGATAGTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGA                                                                                                                                                                                                          <  SRR13385771.403748/301‑1 (MQ=60)

                                                                                                              ACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCT                                                                                                                                                                                   <  SRR13385771.1811873/301‑1 (MQ=60)

                                                                                                                                                 TTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGA                                                                                                                                                              <  SRR13385771.68019/287‑1 (MQ=60)

                                                                                                                                                        ATATCAATGATATTTCTCGAACCTGGAATTCTAATGGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTGCGTTTGGATTATGAGATGTTGTGGACCGCCTCATTG                                                                                                                                          <  SRR13385771.1122409/300‑1 (MQ=60)

                                                                                                                                                                   ATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGCTTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGCTACACT                                                                                                                              >  SRR13385771.173996/1‑301 (MQ=60)

                                                                                                                                                                                 GAATGCTAATTGAG‑AAAAAAAAAAGTTAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCA                                                                                                                <  SRR13385771.1459434/301‑1 (MQ=60)

                                                                                                                                                                                                         AGTGAAAAGGAAATGAGAGTATTAATAGTTAGTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAGA‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTT                                                                                         <  SRR13385771.78523/301‑1 (MQ=60)

                                                                                                                                                                                                                        AGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAAGTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTA                                                                          <  SRR13385771.1447221/301‑1 (MQ=60)

                                                                                                                                                                                                                                   ATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACA                                                                <  SRR13385771.732713/300‑1 (MQ=60)

                                                                                                                                                                                                                                      TATTAAGTATGGATCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATGAGTTTAAAGCAGAATGCATCCGTATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACTGAACGTTATTCACTCATTATACGCTGCGTTCGTTTGGATTATGAGAAGTTTTTGACCGCCTCATTGATGGTATACACTTCTTTATACCATCAATCACAGAAGACCAAATTTTTTTGATGTAGGTTAGGTATAAGCCCACAAAC                                                             >  SRR13385771.170935/1‑300 (MQ=60)

                                                                                                                                                                                                                                         TAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATG                                                          <  SRR13385771.1209829/300‑1 (MQ=60)

                                                                                                                                                                                                                                          AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                        <  SRR13385771.1194830/301‑1 (MQ=60)

                                                                                                                                                                                                                                          AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                        <  SRR13385771.1074199/301‑1 (MQ=60)

                                                                                                                                                                                                                                                     ATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCC                                                                   <  SRR13385771.97175/279‑1 (MQ=60)

                                                                                                                                                                                                                                                            ATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAAC                                      <  SRR13385771.515384/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                 TTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGACGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCACACAAACATGGCGGCAATTTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTATCCATCTGTG  >  SRR13385771.122615/1‑300 (MQ=60)

ACTAATCGTTCCTGACGTTTCTGTTCATCCATGGATGCAAATCAAGGAATGTTCTAATTATATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAG‑AAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTG  >  BK006942/327806‑328392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`