Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAT‑AA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGAC  >  BK006942/327876‑328458
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
GCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTT                                                                                                                                                                                                                                                                                              <  SRR13385772.1076167/300‑1 (MQ=60)
    AGGCTACGGGTGACGGACACACAAACTCGGGACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAAT                                                                                                                                                                                                                                                                                         <  SRR13385772.289488/301‑1 (MQ=60)
                         AAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACTATATAGCAATGATATTGCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGTAGCATATATAATCCGAAAAATGATTATAGATTAATGTAGAATATGATTGGGGAAT‑AAGATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGGTTTCTAACGGAACGTTATT                                                                                                                                                                                                                                                                    <  SRR13385772.1083237/301‑1 (MQ=60)
                                                CGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGAATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCG                                                                                                                                                                                                                                              <  SRR13385772.4176/300‑1 (MQ=60)
                                                    TAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGG                                                                                                                                                                                                                                         >  SRR13385772.1297535/1‑301 (MQ=60)
                                                             TGACTGAAAAGGAATGACGATGTATCAATGATATTTCTCGAACCTGGAATGCGAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTGATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGAGTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCATAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAG                                                                                                                                                                                                                                 <  SRR13385772.527444/300‑1 (MQ=60)
                                                                   AAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATTCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTT                                                                                                                                                                                                                          <  SRR13385772.88179/301‑1 (MQ=60)
                                                                            TACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTA                                                                                                                                                                                                                                                                                                      >  SRR13385772.427538/1‑216 (MQ=60)
                                                                                ATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATT                                                                                                                                                                                                             <  SRR13385772.90150/301‑1 (MQ=60)
                                                                                 TATATCAATGATATTTATCGAACCTGGAATGATAATTGAGAAAACAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGCAT‑AACATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTAACTGATTATAC                                                                                                                                                                                                                                                        >  SRR13385772.839776/1‑257 (MQ=60)
                                                                                  ATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAAGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTGTGGATTATGAGATGTTTTGGACCGCCTCATTGT                                                                                                                                                                                                           >  SRR13385772.323635/1‑301 (MQ=60)
                                                                                       AATGGTATTTGTCGGACCTGGGAGGGTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGG                                                                                                                                                                                                       <  SRR13385772.238255/300‑1 (MQ=60)
                                                                                        ATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTA                                                                                                                                                                                                                                     >  SRR13385772.1257389/1‑269 (MQ=60)
                                                                                             ATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTA                                                                                                                                                                                                                                                                                                  >  SRR13385772.853028/1‑203 (MQ=60)
                                                                                                           GAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATC                                                                                                                                                                                   >  SRR13385772.1286335/1‑300 (MQ=60)
                                                                                                                     TGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGA                                                                                                                                                                          >  SRR13385772.79561/1‑299 (MQ=60)
                                                                                                                                                                     GTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGG                                                                                                                        <  SRR13385772.811463/301‑1 (MQ=60)
                                                                                                                                                                         GGAGCATATATAATACGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAAT                                                                                                                    <  SRR13385772.49921/301‑1 (MQ=60)
                                                                                                                                                                                   TAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCA                                                                                                           >  SRR13385772.1090375/1‑300 (MQ=60)
                                                                                                                                                                                       CCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACG                                                                                                       >  SRR13385772.1189660/1‑300 (MQ=60)
                                                                                                                                                                                                          TAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGCAGGCAGCAGGATGAGGAACAAGAACTGTTGAATAGAATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATG                                                                                                                                                                                                                              >  SRR13385772.891425/1‑162 (MQ=60)
                                                                                                                                                                                                          TAATTTAGAATATGATTTGGGAATAAA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAA                                                                                    >  SRR13385772.719894/1‑300 (MQ=60)
                                                                                                                                                                                                                                AA‑AA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAAC                                                            <  SRR13385772.319632/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                      GATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCCTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAAT                                                                                                                    >  SRR13385772.555417/1‑209 (MQ=60)
                                                                                                                                                                                                                                                                                      TGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGC        >  SRR13385772.1007547/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                      TGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGC        >  SRR13385772.777140/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                       GTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTATAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCG       <  SRR13385772.1189367/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                            ATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGAC  <  SRR13385772.516185/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
GCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAT‑AA‑ATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGAC  >  BK006942/327876‑328458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑