Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGC  >  BK006942/327867‑328454
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    
ATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATT                                                                                                                                                                                                                                                                                                   <  SRR13385771.754462/300‑1 (MQ=60)
 TGTATTGTGCATATGCTACGGGTGAAGGACACAAAAAATCTGAACTTGACGAAGGTCGTCTAATCAAGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAAACTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAAAGTATTAATATTTATTAAGTATGGAGCATATATAATACGCAAAATGATTATAGATTAATATAGAATATGATTTAGGAA‑TAAAATTAACAATTAGTTTAAAGCAGACGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATT                                                                                                                                                                                                                                                                                                   >  SRR13385771.989970/1‑299 (MQ=60)
            TATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGA                                                                                                                                                                                                                                                                                       >  SRR13385771.659322/1‑300 (MQ=60)
                 TACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTT                                                                                                                                                                                                                                                                                 >  SRR13385771.1348014/1‑301 (MQ=60)
                          CAGACACACAAACGCTTAACTTGGCGAAGGTCGTCTAAACACGTTTACTGAAAAGGAATTACGGTATATCCATGATAGTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGA                                                                                                                                                                                                                                                                        <  SRR13385771.403748/301‑1 (MQ=60)
                                                 ACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCT                                                                                                                                                                                                                                                 <  SRR13385771.1811873/301‑1 (MQ=60)
                                                                                    TTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGA                                                                                                                                                                                                                            <  SRR13385771.68019/287‑1 (MQ=60)
                                                                                           ATATCAATGATATTTCTCGAACCTGGAATTCTAATGGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTGCGTTTGGATTATGAGATGTTGTGGACCGCCTCATTG                                                                                                                                                                                                        <  SRR13385771.1122409/300‑1 (MQ=60)
                                                                                                      ATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGCTTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGCTACACT                                                                                                                                                                                            >  SRR13385771.173996/1‑301 (MQ=60)
                                                                                                                    GAATGCTAATTGAGAAAAAAAAAAGTTAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCA                                                                                                                                                                              <  SRR13385771.1459434/301‑1 (MQ=60)
                                                                                                                                           AGTGAAAAGGAAATGAGAGTATTAATAGTTAGTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAGA‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTT                                                                                                                                                       <  SRR13385771.78523/301‑1 (MQ=60)
                                                                                                                                                          AGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAAGTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTA                                                                                                                                        <  SRR13385771.1447221/301‑1 (MQ=60)
                                                                                                                                                                     ATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACA                                                                                                                              <  SRR13385771.732713/300‑1 (MQ=60)
                                                                                                                                                                        TATTAAGTATGGATCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATGAGTTTAAAGCAGAATGCATCCGTATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACTGAACGTTATTCACTCATTATACGCTGCGTTCGTTTGGATTATGAGAAGTTTTTGACCGCCTCATTGATGGTATACACTTCTTTATACCATCAATCACAGAAGACCAAATTTTTTTGATGTAGGTTAGGTATAAGCCCACAAAC                                                                                                                           >  SRR13385771.170935/1‑300 (MQ=60)
                                                                                                                                                                           TAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATG                                                                                                                        <  SRR13385771.1209829/300‑1 (MQ=60)
                                                                                                                                                                            AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                                                                                      <  SRR13385771.1074199/301‑1 (MQ=60)
                                                                                                                                                                            AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                                                                                      <  SRR13385771.1194830/301‑1 (MQ=60)
                                                                                                                                                                                       ATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCC                                                                                                                                 <  SRR13385771.97175/279‑1 (MQ=60)
                                                                                                                                                                                              ATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAAC                                                                                                    <  SRR13385771.515384/301‑1 (MQ=60)
                                                                                                                                                                                                                                   TTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGACGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCACACAAACATGGCGGCAATTTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTATCCATCTGTG                                                                >  SRR13385771.122615/1‑300 (MQ=60)
                                                                                                                                                                                                                                                    CAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTT                                               >  SRR13385771.1038207/1‑301 (MQ=60)
                                                                                                                                                                                                                                                     AATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTC                                              <  SRR13385771.403718/301‑1 (MQ=60)
                                                                                                                                                                                                                                                         AGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCATCATTGATGGGATACACCTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGAAATGTTAAAGCACACGAAAACACATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTG                                           >  SRR13385771.108621/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                         AAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCC                                                                                                                                  >  SRR13385771.278512/1‑181 (MQ=60)
                                                                                                                                                                                                                                                                                                 TTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATCTTTTGGACTGCCTCATTGCTGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAACCCACAAACATGGCGGCAATGTTACAGCAAACGCAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCACGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGC  >  SRR13385771.433563/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    
ATGTATTGTGCATATGCTACGGGTGACGGACACACAAACTCTGAACTTGACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGC  >  BK006942/327867‑328454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑